SMTL ID : 9dc9.1

Mtb GuaB dCBS in complex with inhibitor compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 21 residues within 4Å: Chain A: S.98, M.100, N.203, G.228, S.229, I.230, C.231, D.264, G.265, G.266, M.285, L.286, G.287, S.288, Y.311, G.313, M.314, G.315, E.348, G.349 Ligands: 01.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.98, A:N.203, A:S.229, A:D.264, A:G.266, A:G.287, A:S.288, A:Y.311, A:M.314, A:G.315, A:E.348 Water bridges: A:G.226, A:G.228, A:T.233, A:G.266, A:L.267, A:L.267 IMP.3: 21 residues within 4Å: Chain B: S.98, M.100, N.203, G.228, S.229, I.230, C.231, D.264, G.265, G.266, M.285, L.286, G.287, S.288, Y.311, G.313, M.314, G.315, E.348, G.349 Ligands: 01.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:S.98, B:N.203, B:S.229, B:D.264, B:G.266, B:G.287, B:S.288, B:Y.311, B:M.314, B:G.315, B:E.348 Water bridges: B:G.226, B:G.228, B:T.233, B:G.266, B:L.267, B:L.267 IMP.5: 21 residues within 4Å: Chain C: S.98, M.100, N.203, G.228, S.229, I.230, C.231, D.264, G.265, G.266, M.285, L.286, G.287, S.288, Y.311, G.313, M.314, G.315, E.348, G.349 Ligands: 01.6 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:S.98, C:N.203, C:S.229, C:D.264, C:G.266, C:G.287, C:S.288, C:Y.311, C:M.314, C:G.315, C:E.348 Water bridges: C:G.226, C:G.228, C:T.233, C:G.266, C:L.267, C:L.267 IMP.7: 21 residues within 4Å: Chain D: S.98, M.100, N.203, G.228, S.229, I.230, C.231, D.264, G.265, G.266, M.285, L.286, G.287, S.288, Y.311, G.313, M.314, G.315, E.348, G.349 Ligands: 01.8 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:S.98, D:N.203, D:S.229, D:D.264, D:G.266, D:G.287, D:S.288, D:Y.311, D:M.314, D:G.315, D:E.348 Water bridges: D:G.226, D:G.228, D:T.233, D:G.266, D:L.267, D:L.267

4 x 01: (3P)-3-(4-chloro-1H-imidazol-2-yl)-5-[(1R)-1-{[(3M)-3-(1H-pyrazol-5-yl)phenyl]oxy}ethyl]pyridine

01.2: 15 residues within 4Å: Chain A: R.123, D.173, A.175, T.233, M.314, G.315, M.320, L.345, V.346, P.347, E.348 Chain C: A.373, G.376, Y.377 Ligands: IMP.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.175, A:M.314 Hydrogen bonds: A:R.123, A:D.173, A:E.348 01.4: 15 residues within 4Å: Chain B: R.123, D.173, A.175, T.233, M.314, G.315, M.320, L.345, V.346, P.347, E.348 Chain D: A.373, G.376, Y.377 Ligands: IMP.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.175, B:M.314 Hydrogen bonds: B:R.123, B:D.173, B:E.348 01.6: 15 residues within 4Å: Chain B: A.373, G.376, Y.377 Chain C: R.123, D.173, A.175, T.233, M.314, G.315, M.320, L.345, V.346, P.347, E.348 Ligands: IMP.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:A.175, C:M.314 Hydrogen bonds: C:R.123, C:D.173, C:E.348 01.8: 15 residues within 4Å: Chain A: A.373, G.376, Y.377 Chain D: R.123, D.173, A.175, T.233, M.314, G.315, M.320, L.345, V.346, P.347, E.348 Ligands: IMP.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:A.175, D:M.314 Hydrogen bonds: D:R.123, D:D.173, D:E.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Discovery of potent dihydro-oxazinoquinolinone inhibitors of GuaB for the treatment of tuberculosis. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-11-27

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase

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