SMTL ID : 9dft.1 (1 other biounit)

G1 domain of human aggrecan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: R.61, V.68, Y.84, N.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.61, A:Y.84, A:N.110, A:D.178 NAG.2: 11 residues within 4Å: Chain A: I.137, V.138, F.139, F.180, H.181, Y.271, W.274, I.295, V.314, H.315, N.317 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.314 Hydrogen bonds: A:V.138, A:G.179, A:H.181, A:I.295 NAG.3: 1 residues within 4Å: Chain A: N.223 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Otsuka, M.Y. et al., Aggrecan immobilizes to perineuronal nets through hyaluronan-dependent and independent binding activities. J.Biol.Chem.

Release Date

2025-04-30

Peptides

Aggrecan core protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aggrecan core protein

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