SMTL ID : 9dgh.1

Focused region on azoRhuA-bCDRhuA co-assembled nanotubes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

2 x GLC- GCU- GLC- GLC- GCU- GLC- GLC: Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-4)-alpha-D-glucopyranose

GLC-GCU-GLC-GLC-GCU-GLC-GLC.1: 13 residues within 4Å: Chain C: P.61, C.98, A.100 Chain I: A.100 Ligands: GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, 01.9, 01.13 No protein-ligand interaction detected (PLIP) GLC-GCU-GLC-GLC-GCU-GLC-GLC.2: 12 residues within 4Å: Chain F: Y.55, A.100 Chain N: P.61 Ligands: GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, 01.9, 01.13 No protein-ligand interaction detected (PLIP)

16 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.141, A:H.143, A:H.212 ZN.4: 3 residues within 4Å: Chain B: H.141, H.143, H.212 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.141, B:H.143, B:H.212, B:H.212 ZN.5: 3 residues within 4Å: Chain C: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.141, C:H.143, C:H.212 ZN.6: 3 residues within 4Å: Chain D: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.141, D:H.212, D:H.212 ZN.7: 3 residues within 4Å: Chain E: H.141, H.143, H.212 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.141, E:H.143, E:H.143, E:H.212 ZN.8: 4 residues within 4Å: Chain E: E.171 Chain F: H.141, H.143, H.212 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:H.141, F:H.143, F:H.143, F:H.212, F:H.212 ZN.10: 3 residues within 4Å: Chain G: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.141, G:H.143, G:H.212 ZN.11: 3 residues within 4Å: Chain H: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:H.141, H:H.143, H:H.212 ZN.12: 4 residues within 4Å: Chain I: H.141, H.143, H.212 Chain K: E.171 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.141, I:H.143, I:H.212, I:H.212 ZN.14: 3 residues within 4Å: Chain J: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:H.141, J:H.143, J:H.212 ZN.15: 3 residues within 4Å: Chain K: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:H.141, K:H.143, K:H.212 ZN.16: 4 residues within 4Å: Chain L: G.31, H.141, H.143, H.212 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:H.141, L:H.143 ZN.17: 3 residues within 4Å: Chain M: H.141, H.143, H.212 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:H.141, M:H.143, M:H.212, M:H.212 ZN.18: 3 residues within 4Å: Chain N: H.141, H.143, H.212 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:H.141, N:H.143, N:H.212 ZN.19: 3 residues within 4Å: Chain O: H.141, H.143, H.212 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:H.141, O:H.143, O:H.212, O:H.212 ZN.20: 2 residues within 4Å: Chain P: H.143, H.212 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:H.143, P:H.212

2 x 01: 1-[4-(2-phenylhydrazin-1-yl)phenyl]pyrrolidine-2,5-dione

01.9: 11 residues within 4Å: Chain F: C.98 Ligands: GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, 01.13 No protein-ligand interaction detected (PLIP) 01.13: 13 residues within 4Å: Chain C: P.63 Chain I: C.98 Ligands: GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.1, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, GLC-GCU-GLC-GLC-GCU-GLC-GLC.2, 01.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Design of light-and chemically responsive protein assemblies through host-guest interactions. Chem (2025)

Release Date

2025-07-16

Peptides

Rhamnulose-1-phosphate aldolase: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
C

E
E

F
H

G
F

H
G

I
I

J
L

K
J

L
K

M
M

N
P

O
N

P
O

Rhamnulose-1-phosphate aldolase