- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x 01: 2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide
01.2: 11 residues within 4Å:- Chain A: A.458, A.459, I.642, T.670, F.806, R.809, L.859, E.860, Y.863, M.892, D.893
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.458, A:I.642, A:T.670, A:L.859, A:Y.863, A:Y.863
- Hydrogen bonds: A:R.809, A:R.809, A:Y.863, A:D.893
- pi-Stacking: A:F.806
01.5: 14 residues within 4Å:- Chain B: A.458, A.459, M.639, I.642, V.645, T.670, Y.674, T.755, F.806, R.809, E.860, Y.863, M.892, D.893
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:A.458, B:M.639, B:V.645, B:T.670, B:F.806, B:Y.863
- pi-Cation interactions: B:R.809, B:R.809
01.8: 13 residues within 4Å:- Chain C: A.458, A.459, I.642, T.670, Y.674, T.755, F.806, R.809, L.859, E.860, Y.863, M.892, D.893
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:A.458, C:I.642, C:T.670, C:F.806, C:F.806, C:L.859
- Hydrogen bonds: C:R.809, C:R.809, C:E.860, C:D.893
01.11: 10 residues within 4Å:- Chain D: A.458, A.459, I.642, T.670, T.755, F.806, R.809, E.860, Y.863, M.892
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:I.642, D:T.670, D:F.806, D:Y.863
- Hydrogen bonds: D:R.809, D:R.809, D:Y.863, D:Y.863
- 4 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.3: 16 residues within 4Å:- Chain A: V.181, V.183, D.184, K.189, A.342, T.345, E.359, A.360, K.362, D.363
- Chain C: S.1186, C.1189, W.1190, L.1215, G.1216, M.1219
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:V.181, A:V.183, A:A.342, C:W.1190, C:L.1215
- Hydrogen bonds: A:K.362, A:D.363
- Salt bridges: A:K.189
CPS.6: 16 residues within 4Å:- Chain B: V.181, V.183, D.184, K.189, A.342, T.345, E.359, A.360, K.362, D.363
- Chain D: S.1186, C.1189, W.1190, L.1215, G.1216, M.1219
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: D:W.1190, D:L.1215, B:V.181, B:V.183, B:A.342
- Hydrogen bonds: B:K.362, B:D.363
- Salt bridges: B:K.189
CPS.9: 14 residues within 4Å:- Chain A: S.1186, W.1190, G.1216, M.1219
- Chain C: V.181, V.183, D.184, K.189, A.342, T.345, E.359, A.360, K.362, D.363
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:V.181, C:V.183, C:A.342, A:W.1190
- Hydrogen bonds: C:K.362, C:D.363, C:D.363
- Salt bridges: C:D.184, C:K.189
CPS.12: 16 residues within 4Å:- Chain B: S.1186, C.1189, W.1190, L.1215, G.1216, M.1219
- Chain D: V.181, V.183, D.184, K.189, A.342, T.345, E.359, A.360, K.362, D.363
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:V.181, D:V.183, D:A.342, B:W.1190, B:L.1215
- Hydrogen bonds: D:K.362, D:D.363
- Salt bridges: D:K.189
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matico, R. et al., Navigating from cellular phenotypic screen to clinical candidate: selective targeting of the NLRP3 inflammasome. Embo Mol Med (2024)
- Release Date
- 2024-12-25
- Peptides
- Maltose/maltodextrin-binding periplasmic protein,NACHT, LRR and PYD domains-containing protein 3 chimera: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x 01: 2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide
- 4 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matico, R. et al., Navigating from cellular phenotypic screen to clinical candidate: selective targeting of the NLRP3 inflammasome. Embo Mol Med (2024)
- Release Date
- 2024-12-25
- Peptides
- Maltose/maltodextrin-binding periplasmic protein,NACHT, LRR and PYD domains-containing protein 3 chimera: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D