SMTL ID : 9dix.1

HCMV gH/UL116/UL141 3-mer complex, ectodomain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.164, L.365 Chain B: G.172, K.194 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: S.615, E.617, A.620, L.670, N.672, G.673, T.674 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain D: N.164, L.365 Chain E: G.172, K.194 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 7 residues within 4Å: Chain D: S.615, E.617, A.620, L.670, N.672, G.673, T.674 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 6 residues within 4Å: Chain B: M.13, W.45, N.118, Y.119, S.120, H.121 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 6 residues within 4Å: Chain E: M.13, W.45, N.118, Y.119, S.120, H.121 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain B: T.86, W.87, N.88 Chain E: S.90 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.88 NAG.8: 5 residues within 4Å: Chain B: G.31, E.32, Q.33, Y.84, N.103 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.84 Hydrogen bonds: B:G.31 NAG.9: 4 residues within 4Å: Chain B: S.90 Chain E: T.86, W.87, N.88 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.88 NAG.10: 5 residues within 4Å: Chain E: G.31, E.32, Q.33, Y.84, N.103 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:Y.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norris, M.J. et al., A noncanonical glycoprotein H complex enhances cytomegalovirus entry. Biorxiv (2024)

Release Date

2024-11-20

Peptides

Envelope glycoprotein H: AD
Protein UL141: BE
UL116: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Envelope glycoprotein H

Protein UL141

UL116

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