SMTL ID : 9dme.1

Type 3 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-15-mer

Ligands

15 x 8VH: 1,3-dimethylbenzene(Covalent)

8VH.1: 5 residues within 4Å: Chain A: C.2, V.17, P.20, C.22 Chain G: C.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.17, A:P.20 8VH.2: 5 residues within 4Å: Chain B: C.2, V.17, P.20, C.22 Chain H: C.2 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.17, B:P.20 8VH.3: 4 residues within 4Å: Chain C: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:V.17, C:P.20 8VH.4: 4 residues within 4Å: Chain D: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:V.17, D:P.20 8VH.5: 5 residues within 4Å: Chain C: C.2 Chain E: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:V.17, E:P.20 8VH.6: 5 residues within 4Å: Chain D: C.2 Chain F: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:V.17, F:P.20 8VH.7: 5 residues within 4Å: Chain E: C.2 Chain G: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:V.17, G:P.20 8VH.8: 5 residues within 4Å: Chain F: C.2 Chain H: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:V.17, H:P.20 8VH.9: 5 residues within 4Å: Chain A: C.2 Chain I: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:V.17, I:P.20 8VH.10: 5 residues within 4Å: Chain B: C.2 Chain J: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:V.17, J:P.20 8VH.11: 5 residues within 4Å: Chain K: C.2, V.17, P.20, C.22 Chain L: C.2 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:V.17, K:P.20 8VH.12: 4 residues within 4Å: Chain L: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:V.17, L:P.20 8VH.13: 5 residues within 4Å: Chain M: C.2, V.17, P.20, C.22 Chain O: C.2 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:V.17, M:P.20 8VH.14: 5 residues within 4Å: Chain M: C.2 Chain N: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:V.17, N:P.20 8VH.15: 5 residues within 4Å: Chain K: C.2 Chain O: C.2, V.17, P.20, C.22 2 PLIP interactions: 2 interactions with chain O Hydrophobic interactions: O:V.17, O:P.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structure-based design of seed-competent proteomimetic macrocycles derived from 4R tauopathic folds. To Be Published

Release Date

2025-04-23

Peptides

Microtubule-associated protein tau: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
L

C
A

D
C

E
D

F
F

G
G

H
I

I
M

J
O

K
K

L
N

M
E

N
B

O
H

Microtubule-associated protein tau