SMTL ID : 9dnp.1 (1 other biounit)

Structure of UBR2-RFF complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x ARG- PHE- PHE- NH2: ARG-PHE-PHE-NH2(Non-covalent)

ARG-PHE-PHE-NH2.1: 13 residues within 4Å: Chain A: T.15, T.26, C.27, V.28, T.47, T.48, S.49, G.52, G.53, F.54, D.56, D.59, A.62 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.15, A:T.26, A:T.47 Hydrogen bonds: A:T.26, A:G.53, A:F.54, A:F.54 Water bridges: A:T.26, A:D.56, A:D.56, A:E.61 Salt bridges: A:D.56, A:D.59

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.5, C.30, C.33, C.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.30, A:C.33, A:C.55 ZN.3: 4 residues within 4Å: Chain A: C.33, C.57, C.69, H.72 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.57, A:C.69, A:H.72 ZN.4: 4 residues within 4Å: Chain A: C.18, C.21, H.39, H.42 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:H.39, A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, S. et al., Structural Flexibility and Selectivity of N-End Rule Ligases. To Be Published

Release Date

2025-08-13

Peptides

E3 ubiquitin-protein ligase UBR2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UBR2

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