SMTL ID : 9dp2.1 (1 other biounit)

APE1 N174A Product Complex with Abasic DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.28, E.54 Chain B: N.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.54, H2O.1, H2O.1, H2O.2, H2O.12

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.2, Y.3, W.225, R.232, N.235, S.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.3, A:Y.3, A:R.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeHart, K.D. et al., N174 Physically and Chemically Stabilizes Abasic DNA During the APE1 Endonuclease Reaction. To Be Published

Release Date

2024-10-09

Peptides

DNA repair nuclease/redox regulator APEX1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair nuclease/redox regulator APEX1, mitochondrial

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