SMTL ID : 9dpy.1

BMP-10 with BMP-9 Crystal Contacts

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

13 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: H.61, S.65, K.70 4 PLIP interactions: 4 interactions with chain A Water bridges: A:H.61, A:K.70 Salt bridges: A:H.61, A:K.70 PO4.2: 3 residues within 4Å: Chain A: A.45, E.46, H.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.46, A:E.46, A:H.47 Salt bridges: A:H.47 PO4.3: 4 residues within 4Å: Chain A: K.17, D.22, I.25, I.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.22 Water bridges: A:K.17 Salt bridges: A:K.17 PO4.4: 5 residues within 4Å: Chain A: P.80, I.81, S.82, Y.95, K.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.82, A:S.82, A:S.82 PO4.5: 6 residues within 4Å: Chain A: R.9, Y.34, E.79, A.101, V.102, S.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.102 Salt bridges: A:R.9 PO4.6: 5 residues within 4Å: Chain A: R.9, H.47, L.48, E.104, C.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.47, A:H.47, A:C.105 PO4.8: 3 residues within 4Å: Chain B: H.61, S.65, K.70 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.61, B:H.61 Salt bridges: B:H.61, B:K.70 PO4.9: 8 residues within 4Å: Chain A: V.74, P.75, T.76, R.108 Chain B: V.74, P.75, T.76, R.108 3 PLIP interactions: 3 interactions with chain B Water bridges: B:P.75, B:R.108 Salt bridges: B:R.108 PO4.10: 3 residues within 4Å: Chain B: A.45, E.46, H.47 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.46, B:E.46, B:H.47 Salt bridges: B:H.47 PO4.11: 4 residues within 4Å: Chain B: N.5, R.37, G.38, V.39 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.5, B:G.38 Water bridges: B:N.5, B:R.37 Salt bridges: B:R.37 PO4.12: 4 residues within 4Å: Chain B: R.9, T.10, P.11, Y.34 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.9 Salt bridges: B:R.9 PO4.13: 6 residues within 4Å: Chain B: A.27, P.28, S.82, I.83, L.84, L.93 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.82, B:L.84 Water bridges: B:S.82 PO4.14: 1 residues within 4Å: Chain B: V.91 2 PLIP interactions: 2 interactions with chain B Water bridges: B:V.91, B:V.91

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: K.67 Chain B: Y.13, D.15, E.18 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.67, B:E.18 NA.15: 1 residues within 4Å: Chain B: E.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwartze, T.A. et al., Molecular Basis of Interchain Disulfide Bond Formation in BMP-9 and BMP-10. J.Mol.Biol. (2025)

Release Date

2025-03-05

Peptides

Bone morphogenetic protein 10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bone morphogenetic protein 10