SMTL ID : 9dqx.1

Structure of western equine encephalitis virus CBA87 VLP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

hetero-4-4-4-mer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 2 residues within 4Å: Chain A: N.245, N.246 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain B: K.195, N.196, D.232 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.195 Hydrogen bonds: B:N.196, B:D.232 NAG.3: 2 residues within 4Å: Chain B: T.284, N.318 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain D: N.245, N.246 No protein-ligand interaction detected (PLIP) NAG.5: 1 residues within 4Å: Chain E: N.245 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain F: N.245 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain G: G.194, K.195, N.196, D.232 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:G.194, G:D.232 NAG.8: 1 residues within 4Å: Chain G: N.318 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain H: N.196, D.232 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:D.232 NAG.10: 3 residues within 4Å: Chain H: W.279, T.284, N.318 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:N.318 NAG.11: 2 residues within 4Å: Chain I: N.196, D.232 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.196 NAG.12: 2 residues within 4Å: Chain I: T.284, N.318 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abraham, J. et al., Structure of western equine encephalitis virus CBA87 VLP. To Be Published

Release Date

2025-03-26

Peptides

Structural polyprotein: ADEF
Structural polyprotein: BGHI
Capsid protein: CJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

D
D

E
G

F
A

B
K

G
E

H
H

I
B

C
L

J
F

K
I

L
C

Membrane

We predict this structure to be a membrane protein.
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Structural polyprotein

Structural polyprotein

Capsid protein

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