SMTL ID : 9dsy.1

Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with Succinic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 11 residues within 4Å: Chain A: V.14, V.15, K.21, D.53, K.74, R.149, Q.151, F.172, N.193, L.214, Y.216 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.14, A:F.172 Hydrogen bonds: A:D.53, A:N.193, A:Y.216 Water bridges: A:K.21, A:K.74, A:Q.151 Salt bridges: A:K.21, A:K.74, A:K.74, A:R.149

5 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: E.157, P.167 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.157, H2O.5, H2O.7 ZN.3: 3 residues within 4Å: Chain A: H.18, D.258, R.261 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.18 ZN.4: 1 residues within 4Å: Chain A: H.18 No protein-ligand interaction detected (PLIP) ZN.5: 3 residues within 4Å: Chain A: D.98, H.125, N.248 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:D.98, A:H.125, H2O.8 ZN.6: 1 residues within 4Å: Chain A: E.246 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.246, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of C4-Dicarboxylate-Binding Periplasmic Protein (PA5167) of Tripartite ATP-independent Periplasmic Transporter Family from Pseudomonas aeruginosa PAO1 in Complex with Succinic Acid. To Be Published

Release Date

2024-10-09

Peptides

C4-dicarboxylate-binding periplasmic protein DctP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C4-dicarboxylate-binding periplasmic protein DctP