SMTL ID : 9dtk.1

Crystal structure of UDP-N-acetylenolpyruvoylglucosamine reductase (MurB) from Brucella ovis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Q.46, R.88, L.89, S.90, A.91 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.91 Water bridges: A:Q.46, A:R.88, A:R.88, A:L.89 Salt bridges: A:R.88

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 34 residues within 4Å: Chain A: W.34, V.68, V.69, G.70, I.71, G.72, S.73, N.74, L.75, L.89, A.109, I.134, P.135, G.136, G.137, G.139, G.140, A.141, R.143, M.144, A.146, G.147, A.148, R.182, L.190, I.191, F.192, R.218, V.224, T.228, G.229, G.230, K.303 Ligands: EPU.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:W.34, A:P.135, A:V.224 Hydrogen bonds: A:V.68, A:G.70, A:I.71, A:G.72, A:S.73, A:S.73, A:S.73, A:N.74, A:N.74, A:G.136, A:G.137, A:G.147, A:G.147, A:F.192, A:F.192, A:R.218, A:R.218, A:K.303, A:K.303 Water bridges: A:G.139, A:G.140

1 x EPU: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID(Non-covalent)

EPU.3: 21 residues within 4Å: Chain A: A.148, N.149, Y.181, R.182, H.217, R.218, V.221, Q.222, G.230, S.231, F.233, K.234, N.235, W.242, R.251, M.263, H.264, C.265, N.266, F.267 Ligands: FAD.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:W.242, A:H.264, A:F.267 Hydrogen bonds: A:N.149, A:Y.181, A:R.182, A:R.218, A:R.218, A:Q.222, A:S.231, A:S.231, A:S.231, A:N.235, A:R.251, A:R.251, A:C.265 Water bridges: A:N.235, A:S.240, A:N.266 Salt bridges: A:R.182, A:H.217, A:H.264, A:H.264 pi-Stacking: A:W.242, A:W.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minjarez-Saenz, M. et al., Structural and functional insights into UDP-N-acetylglucosamine-enolpyruvate reductase (MurB) from Brucella ovis. Arch.Biochem.Biophys. (2025)

Release Date

2025-01-22

Peptides

UDP-N-acetylenolpyruvoylglucosamine reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylenolpyruvoylglucosamine reductase