SMTL ID : 9due.1

Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound SRM-07-081a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 01: 3-chloro-6-(4-methylpiperazin-1-yl)-4-(pyridin-4-yl)pyridazine

01.1: 14 residues within 4Å: Chain A: L.18, V.26, A.39, K.41, I.76, L.92, E.93, L.94, V.95, E.99, E.142, N.143, I.159 Ligands: BO3.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.39, A:I.76, A:I.159 Hydrogen bonds: A:V.95 Salt bridges: A:E.99

1 x BO3: BORIC ACID(Non-covalent)

BO3.2: 4 residues within 4Å: Chain A: S.20, E.99, E.142 Ligands: 01.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20, A:E.99

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: F.235, K.248, R.252 4 PLIP interactions: 4 interactions with chain A Water bridges: A:F.235, A:K.248 Salt bridges: A:K.248, A:R.252 SO4.4: 4 residues within 4Å: Chain A: S.50, S.51, R.52, R.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.52, A:R.53 SO4.5: 4 residues within 4Å: Chain A: E.58, R.62, H.165, K.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.58 Salt bridges: A:R.62, A:K.174 SO4.6: 3 residues within 4Å: Chain A: Y.233, E.234, R.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.233, A:R.252 Water bridges: A:F.235 SO4.7: 1 residues within 4Å: Chain A: H.79 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of Human DAPK1 Catalytic Subunit Complexed with Compound SRM-07-081a. To Be Published

Release Date

2024-10-09

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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