SMTL ID : 9dur.1

Cryo-EM Structure of CRBN:dHTC1:ENL YEATS

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.366, Q.368, C.369, C.434, I.436, C.437, S.439 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.366, A:C.369, A:C.434, A:C.437

1 x 01: 2-[3-[2-[4-[[(5~{S})-1,3-bis(oxidanylidene)-2,7-diazaspiro[4.4]nonan-7-yl]sulfonylamino]piperidin-1-yl]ethylcarbamoyl]phenyl]-~{N}-cyclobutyl-imidazo[1,2-a]pyridine-6-carboxamide

01.2: 26 residues within 4Å: Chain A: V.393, N.394, P.395, H.396, I.414, H.421, S.422, W.423, W.429, V.431, H.440, W.443, F.445 Chain B: F.28, H.56, S.58, F.59, P.60, E.74, E.75, S.76, G.77, Y.78, A.79, G.80, F.81 17 PLIP interactions: 11 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:F.28, B:P.60, B:Y.78, B:Y.78, B:A.79, B:F.81, A:I.414, A:W.429, A:W.429 Hydrogen bonds: B:S.58, B:E.74, B:E.75, B:Y.78, B:A.79, A:H.421, A:W.423, A:W.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaum, J.B. et al., High-throughput diversification of protein-ligand surfaces to discover chemical inducers of proximity. Biorxiv (2025)

Release Date

2025-11-19

Peptides

Protein cereblon: A
Protein ENL: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Protein cereblon

Protein ENL

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