SMTL ID : 9dyq.1 (1 other biounit)

Crystal structure of human dysferlin C2G domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.113, S.116, F.117, D.119 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.113, A:S.116, A:F.117, A:D.119, A:D.119 CA.2: 7 residues within 4Å: Chain A: D.25, D.26, D.111, D.113, D.119 Ligands: CA.1, CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.25, A:D.26, A:D.111, A:D.113, A:D.119 CA.3: 6 residues within 4Å: Chain A: D.26, D.36, D.111, N.112, D.113 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.26, A:D.111, A:N.112, A:D.113, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: D.113, K.114, F.115, S.116 Ligand excluded by PLIP

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 4 residues within 4Å: Chain A: W.17, N.18, K.165, E.185 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.165 Salt bridges: A:K.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: W.42, Q.108, W.110, F.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dominguez, M.J. et al., Crystal structure of human dysferlin C2G domain. To Be Published

Release Date

2025-10-22

Peptides

Dysferlin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dysferlin

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