SMTL ID : 9dzd.1

PvRBP2b N-terminal domain stabilised mutant WHT2484

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Y.71, V.180, D.183, F.184, I.187 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.71 GOL.2: 4 residues within 4Å: Chain A: N.199, T.202, F.203 Ligands: PEG.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.199, A:N.304 GOL.3: 5 residues within 4Å: Chain A: T.178, N.179, W.182, K.270, P.271 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.178, A:T.178, A:K.270, A:K.270 Water bridges: A:T.178 GOL.4: 8 residues within 4Å: Chain A: H.72, E.74, K.171, C.172, D.175, C.176, Q.177, L.279 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.72, A:E.74, A:K.171, A:C.172, A:Q.177 Water bridges: A:V.180

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: F.203, Q.206, F.207, S.210, E.311 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.206, A:S.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D Sa, J. et al., Stabilized designs of the malaria adhesin protein PvRBP2b for use as a potential diagnostic for Plasmodium vivax. J.Biol.Chem. (2025)

Release Date

2025-02-26

Peptides

Reticulocyte-binding protein 2b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reticulocyte-binding protein 2b