SMTL ID : 9e39.1

Gag CA-SP1 (T8I) immature lattice bound with Bevirimat from enveloped virus like particles

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-18-mer

Ligands

1 x 2I4: 3alpha-[(3-carboxy-3-methylbutanoyl)oxy]-8alpha,9beta,10alpha,13alpha,17alpha,19beta-lup-20(29)-en-28-oic acid(Non-covalent)

2I4.1: 12 residues within 4Å: Chain A: L.220, I.228 Chain D: L.220 Chain G: L.220, M.224 Chain J: L.220, M.224 Chain M: L.220, M.224 Chain P: L.220, M.224, I.228 6 PLIP interactions: 1 interactions with chain A, 2 interactions with chain P, 1 interactions with chain J, 1 interactions with chain M, 1 interactions with chain D Hydrophobic interactions: A:I.228, P:L.220, P:I.228, J:L.220, M:L.220, D:L.220

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.2: 12 residues within 4Å: Chain A: K.147, K.216 Chain D: K.147, K.216 Chain G: K.147, K.216 Chain J: K.147, K.216 Chain M: K.147, K.216 Chain P: K.147, K.216 22 PLIP interactions: 4 interactions with chain A, 4 interactions with chain M, 4 interactions with chain P, 4 interactions with chain J, 4 interactions with chain G, 2 interactions with chain D Salt bridges: A:K.147, A:K.147, A:K.216, A:K.216, M:K.147, M:K.147, M:K.216, M:K.216, P:K.147, P:K.147, P:K.216, P:K.216, J:K.147, J:K.147, J:K.216, J:K.216, G:K.147, G:K.216, G:K.216, G:K.216, D:K.147, D:K.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, C. et al., Structural insights into inhibitor mechanisms on immature HIV-1 Gag lattice revealed by high-resolution in situ single-particle cryo-EM. To Be Published

Release Date

2025-10-29

Peptides

Gag: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

Gag

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