SMTL ID : 9e6r.1 (2 other biounits)

BCL11A ZF4-6 in Complex with a DNA Sequence Observed in the Human Globin Locus Containing Motif TGACCA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.17, C.20, H.33, H.37 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.17, A:C.20, A:H.33, A:H.37 ZN.2: 5 residues within 4Å: Chain A: C.45, L.47, C.48, H.61, H.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.45, A:C.48, A:H.61, A:H.65 ZN.3: 4 residues within 4Å: Chain A: C.75, C.78, H.91, H.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.75, A:C.78, A:H.91, A:H.96 ZN.4: 3 residues within 4Å: Chain A: D.15, N.26, C.27 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.15, A:D.15, A:C.27

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: V.23, K.25 Chain B: C.16, A.17 Ligands: MG.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.25 EDO.6: 5 residues within 4Å: Chain A: S.55, S.56, T.59 Chain C: T.4, G.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.56 EDO.9: 6 residues within 4Å: Chain A: Q.54, S.56, K.57 Chain C: G.5, A.6, C.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.57 Water bridges: A:R.60

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.7: 4 residues within 4Å: Chain A: F.24, K.25, N.29 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horton, J.R. et al., Transcription factor BCL11A utilizes two zinc-finger tandem arrays to bind clustered short sequence motifs. To Be Published

Release Date

2025-04-09

Peptides

B-cell lymphoma/leukemia 11A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B-cell lymphoma/leukemia 11A

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