SMTL ID : 9e7k.1

Crystal structure of the UCH37 RPN13 DEUBAD complex bound to an inhibitory nanobody in the canonical ubiquitin binding site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.174 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: R.201 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.217 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.182, G.184, P.185 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Site-Specific Nanobody Inhibitors of the Proteasomal Deubiquitinase UCH37. Biorxiv (2025)

Release Date

2025-09-03

Peptides

Isoform 3 of Ubiquitin carboxyl-terminal hydrolase isozyme L5: A
Nb-cS1: B
Proteasomal ubiquitin receptor ADRM1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Isoform 3 of Ubiquitin carboxyl-terminal hydrolase isozyme L5

Nb-cS1

Proteasomal ubiquitin receptor ADRM1