SMTL ID : 9eau.1

RRV DKTA VLP in complex with VLDLR-LBD-Fc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain M: W.22, D.25, E.27, D.29, D.35 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:W.22, M:D.25, M:E.27, M:D.29, M:D.35 CA.2: 5 residues within 4Å: Chain N: W.22, D.25, E.27, D.29, E.36 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:D.25, N:D.25, N:E.27, N:D.29, N:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raju, S. et al., Structural basis for plasticity in receptor engagement by an encephalitic alphavirus. Cell (2025)

Release Date

2025-04-23

Peptides

Spike glycoprotein E1: ADGJ
Spike glycoprotein E2: BEHK
Capsid protein: CFIL
Very low-density lipoprotein receptor: MN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
E

G
I

J
M

B
B

E
F

H
J

K
N

C
C

F
G

I
K

L
O

M
Y

N
Z

Membrane

We predict this structure to be a membrane protein.
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Spike glycoprotein E1

Spike glycoprotein E2

Capsid protein

Very low-density lipoprotein receptor

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