SMTL ID : 9egv.3 (2 other biounits)

HOIL-1 RING2 domain bound to ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.38, Q.40, C.41, I.43, C.56, V.58, C.59, T.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:C.41, A:C.56, A:C.59 ZN.2: 9 residues within 4Å: Chain A: C.64, V.66, T.67, R.71, C.84, C.86, C.93, C.100 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.64, A:C.84, A:C.93, A:C.100 ZN.3: 6 residues within 4Å: Chain A: V.66, C.86, C.93, C.97, C.100 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.86, A:C.93, A:C.97, A:C.100

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: W.53, R.55 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.55 SO4.5: 3 residues within 4Å: Chain A: R.87, Q.98, N.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.98 Salt bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.S. et al., The RBR E3 ubiquitin ligase HOIL-1 can ubiquitinate diverse non-protein substrates in vitro. Biorxiv (2024)

Release Date

2024-12-11

Peptides

RanBP-type and C3HC4-type zinc finger-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RanBP-type and C3HC4-type zinc finger-containing protein 1

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