SMTL ID : 9ek2.1

HIV-1 immature L20K/E73K/A82T matrix protein p17 lattice

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-39-mer

Ligands

39 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 4 residues within 4Å: Chain 6: R.38 Chain A: G.1, A.2, R.3 Ligand excluded by PLIP MYR.2: 5 residues within 4Å: Chain 8: L.12, I.33 Chain B: G.1, R.3 Ligands: MYR.35 Ligand excluded by PLIP MYR.3: 7 residues within 4Å: Chain 1: A.2, S.5, V.6 Chain C: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.4: 5 residues within 4Å: Chain 4: R.3, V.6 Chain D: G.1, A.2, R.3 Ligand excluded by PLIP MYR.5: 4 residues within 4Å: Chain E: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.6: 8 residues within 4Å: Chain 0: L.30, K.31, I.33, V.34 Chain F: G.1, A.2, R.3, A.4 Ligand excluded by PLIP MYR.7: 6 residues within 4Å: Chain G: G.1, A.2, R.3 Ligands: MYR.38 Chain b: V.6, L.12 Ligand excluded by PLIP MYR.8: 5 residues within 4Å: Chain H: G.1, A.2 Chain c: L.30, K.31, V.34 Ligand excluded by PLIP MYR.9: 1 residues within 4Å: Chain I: G.1 Ligand excluded by PLIP MYR.10: 9 residues within 4Å: Chain 5: A.2, V.6, L.12, L.30, I.33 Chain J: G.1, A.2, R.3 Ligands: MYR.32 Ligand excluded by PLIP MYR.11: 5 residues within 4Å: Chain 9: I.33, V.34 Chain K: G.1, A.2, R.3 Ligand excluded by PLIP MYR.12: 5 residues within 4Å: Chain L: G.1, A.2, V.6 Ligands: MYR.37 Chain a: I.33 Ligand excluded by PLIP MYR.13: 5 residues within 4Å: Chain M: G.1, A.2, R.3, A.4, V.6 Ligand excluded by PLIP MYR.14: 7 residues within 4Å: Chain N: G.1, A.2 Chain O: L.30, K.31, V.34, R.38 Ligands: MYR.15 Ligand excluded by PLIP MYR.15: 6 residues within 4Å: Chain N: R.3, L.30 Chain O: G.1, A.2, R.3 Ligands: MYR.14 Ligand excluded by PLIP MYR.16: 3 residues within 4Å: Chain P: G.1, A.2, R.3 Ligand excluded by PLIP MYR.17: 5 residues within 4Å: Chain Q: G.1, A.2, R.3 Chain V: L.30 Ligands: MYR.22 Ligand excluded by PLIP MYR.18: 6 residues within 4Å: Chain R: G.1, A.2, R.3, A.4 Chain S: V.34, S.37 Ligand excluded by PLIP MYR.19: 5 residues within 4Å: Chain R: L.30, K.31, R.38 Chain S: G.1, A.2 Ligand excluded by PLIP MYR.20: 4 residues within 4Å: Chain T: G.1 Chain U: L.30, K.31, V.34 Ligand excluded by PLIP MYR.21: 6 residues within 4Å: Chain T: R.3, V.6, L.30 Chain U: G.1, A.2, R.3 Ligand excluded by PLIP MYR.22: 6 residues within 4Å: Chain Q: L.12 Chain V: G.1, A.2, R.3, V.6 Ligands: MYR.17 Ligand excluded by PLIP MYR.23: 3 residues within 4Å: Chain W: G.1, A.2, R.3 Ligand excluded by PLIP MYR.24: 4 residues within 4Å: Chain X: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.25: 5 residues within 4Å: Chain Y: G.1, A.2, R.3, S.5, V.6 Ligand excluded by PLIP MYR.26: 7 residues within 4Å: Chain P: L.30, K.31, I.33, R.38 Chain Z: G.1, A.2, R.3 Ligand excluded by PLIP MYR.27: 7 residues within 4Å: Chain 0: G.1, A.2, R.3 Chain F: A.2, R.3, S.5, I.33 Ligand excluded by PLIP MYR.28: 5 residues within 4Å: Chain 1: G.1, A.2 Chain C: L.30, I.33, V.34 Ligand excluded by PLIP MYR.29: 4 residues within 4Å: Chain 2: G.1, A.2, S.5, L.12 Ligand excluded by PLIP MYR.30: 5 residues within 4Å: Chain 3: G.1, A.2, R.3, A.4, L.7 Ligand excluded by PLIP MYR.31: 6 residues within 4Å: Chain 4: G.1, A.2, R.3 Chain D: L.30, I.33, V.34 Ligand excluded by PLIP MYR.32: 7 residues within 4Å: Chain 5: G.1, A.2, R.3, V.6 Chain J: I.33, V.34 Ligands: MYR.10 Ligand excluded by PLIP MYR.33: 8 residues within 4Å: Chain 6: G.1, A.2, R.3, S.5 Chain A: R.3, L.12, L.30, I.33 Ligand excluded by PLIP MYR.34: 5 residues within 4Å: Chain 7: G.1, A.2, R.3, S.5, L.12 Ligand excluded by PLIP MYR.35: 10 residues within 4Å: Chain 8: G.1, A.2, R.3, V.6 Chain B: R.3, V.6, L.30, I.33, V.34 Ligands: MYR.2 Ligand excluded by PLIP MYR.36: 5 residues within 4Å: Chain 9: G.1, A.2, R.3, V.6 Chain K: I.33 Ligand excluded by PLIP MYR.37: 7 residues within 4Å: Chain L: I.33, V.34 Ligands: MYR.12 Chain a: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.38: 7 residues within 4Å: Chain G: L.30, I.33 Ligands: MYR.7 Chain b: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.39: 7 residues within 4Å: Chain H: I.33, V.34, S.37 Chain c: G.1, A.2, R.3, V.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rey, J.S. et al., Structural maturation of the matrix lattice is not required for HIV-1 particle infectivity. To Be Published

Release Date

2025-01-08

Peptides

Matrix protein p17: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abc

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
e

D
h

E
k

F
G

G
J

H
M

I
P

J
S

K
V

L
Y

M
b

N
B

O
E

P
f

Q
i

R
l

S
H

T
K

U
N

V
Q

W
T

X
W

Y
Z

Z
c

0
C

1
F

2
g

3
j

4
m

5
I

6
L

7
O

8
R

9
U

a
X

b
a

c
d

Matrix protein p17