SMTL ID : 9ek3.1

HIV-1 immature WT matrix protein p17 lattice

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-39-mer

Ligands

39 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 6 residues within 4Å: Chain A: G.1, A.2, R.3 Chain L: K.31, V.34, W.35 Ligand excluded by PLIP MYR.2: 6 residues within 4Å: Chain B: G.1, A.2 Chain E: L.30, K.31, V.34, W.35 Ligand excluded by PLIP MYR.3: 10 residues within 4Å: Chain C: G.1, A.2, R.3, S.5, V.6 Chain G: A.2, R.3, E.11, L.12, I.33 Ligand excluded by PLIP MYR.4: 7 residues within 4Å: Chain D: G.1, A.2, R.3, A.4 Chain R: L.12, I.33 Ligands: MYR.18 Ligand excluded by PLIP MYR.5: 10 residues within 4Å: Chain B: S.5, E.11, L.30, I.33 Chain E: G.1, A.2, R.3, A.4, V.6, L.7 Ligand excluded by PLIP MYR.6: 7 residues within 4Å: Chain 4: L.12, L.30, I.33, V.34 Chain F: G.1, A.2, R.3 Ligand excluded by PLIP MYR.7: 7 residues within 4Å: Chain C: L.30, K.31, I.33, V.34 Chain G: G.1, A.2, R.3 Ligand excluded by PLIP MYR.8: 6 residues within 4Å: Chain H: G.1, A.2, R.3, V.6 Chain b: L.12, I.33 Ligand excluded by PLIP MYR.9: 7 residues within 4Å: Chain I: G.1, A.2, R.3 Chain S: L.30, K.31, I.33, V.34 Ligand excluded by PLIP MYR.10: 4 residues within 4Å: Chain 0: V.6 Chain J: G.1, A.2, R.3 Ligand excluded by PLIP MYR.11: 6 residues within 4Å: Chain K: G.1, A.2 Chain N: L.12, L.30, I.33, V.34 Ligand excluded by PLIP MYR.12: 10 residues within 4Å: Chain A: A.2, R.3, S.5, V.6, E.11, L.12, L.30 Chain L: G.1, A.2, R.3 Ligand excluded by PLIP MYR.13: 6 residues within 4Å: Chain 3: I.33, V.34 Chain M: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.14: 6 residues within 4Å: Chain K: V.6, L.30 Chain N: G.1, A.2, R.3, A.4 Ligand excluded by PLIP MYR.15: 5 residues within 4Å: Chain O: G.1, A.2, R.3, A.4, R.90 Ligand excluded by PLIP MYR.16: 5 residues within 4Å: Chain P: G.1, A.2, A.4, S.5, E.11 Ligand excluded by PLIP MYR.17: 10 residues within 4Å: Chain 8: A.2, L.30, I.33 Chain Q: G.1, A.2, R.3, S.5, V.6, L.12 Ligands: MYR.35 Ligand excluded by PLIP MYR.18: 7 residues within 4Å: Chain D: I.33 Chain R: G.1, A.2, R.3, A.4, V.6 Ligands: MYR.4 Ligand excluded by PLIP MYR.19: 6 residues within 4Å: Chain I: L.30, V.34 Chain S: G.1, A.2, R.3, A.4 Ligand excluded by PLIP MYR.20: 3 residues within 4Å: Chain T: G.1, L.30, I.33 Ligand excluded by PLIP MYR.21: 5 residues within 4Å: Chain U: G.1, A.2 Chain V: S.5, L.30, I.33 Ligand excluded by PLIP MYR.22: 6 residues within 4Å: Chain U: I.33, V.34 Chain V: G.1, A.2, R.3, V.6 Ligand excluded by PLIP MYR.23: 5 residues within 4Å: Chain W: G.1, A.2, R.3, S.5, V.6 Ligand excluded by PLIP MYR.24: 8 residues within 4Å: Chain X: G.1, A.2, R.3 Chain Y: A.2, R.3, V.6, I.33 Ligands: MYR.25 Ligand excluded by PLIP MYR.25: 9 residues within 4Å: Chain X: A.2, R.3, S.5, L.12, I.33 Chain Y: G.1, A.2, R.3 Ligands: MYR.24 Ligand excluded by PLIP MYR.26: 5 residues within 4Å: Chain Z: G.1, A.2, R.3, A.4, V.6 Ligand excluded by PLIP MYR.27: 5 residues within 4Å: Chain 0: G.1, A.2, R.3, A.4 Chain J: V.34 Ligand excluded by PLIP MYR.28: 4 residues within 4Å: Chain 1: G.1, A.2, L.50, H.88 Ligand excluded by PLIP MYR.29: 6 residues within 4Å: Chain 2: G.1, A.2, R.3 Chain 5: L.30, I.33, V.34 Ligand excluded by PLIP MYR.30: 7 residues within 4Å: Chain 3: G.1, A.2, R.3 Chain M: A.2, S.5, L.12, I.33 Ligand excluded by PLIP MYR.31: 7 residues within 4Å: Chain 4: G.1, A.2, R.3, V.6 Chain F: V.6, L.12, I.33 Ligand excluded by PLIP MYR.32: 7 residues within 4Å: Chain 2: V.6, L.12, L.30, I.33 Chain 5: G.1, A.2, R.3 Ligand excluded by PLIP MYR.33: 3 residues within 4Å: Chain 6: G.1, R.3, A.4 Ligand excluded by PLIP MYR.34: 9 residues within 4Å: Chain 7: G.1, A.2, R.3, S.5, V.6 Ligands: MYR.39 Chain c: A.2, L.12, I.33 Ligand excluded by PLIP MYR.35: 7 residues within 4Å: Chain 8: G.1, A.2, R.3, V.6, L.30 Chain Q: I.33 Ligands: MYR.17 Ligand excluded by PLIP MYR.36: 3 residues within 4Å: Chain 9: G.1, A.2, R.3 Ligand excluded by PLIP MYR.37: 5 residues within 4Å: Chain a: G.1, A.2, R.3, S.5, V.6 Ligand excluded by PLIP MYR.38: 8 residues within 4Å: Chain H: S.5, E.11, L.30, I.33, V.34 Chain b: G.1, A.2, R.3 Ligand excluded by PLIP MYR.39: 8 residues within 4Å: Chain 7: I.33, V.34, S.37, L.50 Ligands: MYR.34 Chain c: G.1, A.2, R.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rey, J.S. et al., Structural maturation of the matrix lattice is not required for HIV-1 particle infectivity. To Be Published

Release Date

2025-01-08

Peptides

Matrix protein p17: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abc

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

Matrix protein p17

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