SMTL ID : 9ekb.1

Cryo-EM structure of apo-form human DNA polymerase delta

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1012, C.1015, C.1026, C.1029 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1012, A:C.1015, A:C.1026, A:C.1029

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 9 residues within 4Å: Chain A: Q.485, K.486, C.1058, C.1061, C.1071, C.1076, I.1078, F.1079, R.1082 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.1058, A:C.1061, A:C.1071, A:C.1076

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakami, K.S. et al., Cryo-EM structure of apo-form human DNA polymerase delta elucidates its minimal DNA synthesis activity without PCNA. To Be Published

Release Date

2025-02-05

Peptides

DNA polymerase delta catalytic subunit: A
DNA polymerase delta subunit 2: B
DNA polymerase delta subunit 3: C
DNA polymerase delta subunit 4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA polymerase delta catalytic subunit

DNA polymerase delta subunit 2

DNA polymerase delta subunit 3

DNA polymerase delta subunit 4

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