SMTL ID : 9eku.1

(+)ML-SI3 bound TRPML1-V432A/A433G in a pre-open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ZB4: N-{(1S,2S)-2-[4-(2-methoxyphenyl)piperazin-1-yl]cyclohexyl}benzenesulfonamide(Non-covalent)

ZB4.1: 7 residues within 4Å: Chain A: V.433, C.437, Y.444 Chain D: Y.507, S.511, I.514, Y.515 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:Y.507, D:I.514, D:Y.515, A:V.433 Hydrogen bonds: D:S.511, D:S.511 pi-Stacking: A:Y.444 ZB4.2: 7 residues within 4Å: Chain A: Y.507, S.511, I.514, Y.515 Chain B: V.433, C.437, Y.444 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.507, A:I.514, A:Y.515, B:V.433 Hydrogen bonds: A:S.511, A:S.511 pi-Stacking: B:Y.444 ZB4.3: 7 residues within 4Å: Chain B: Y.507, S.511, I.514, Y.515 Chain C: V.433, C.437, Y.444 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:V.433, B:Y.507, B:I.514, B:Y.515 pi-Stacking: C:Y.444 Hydrogen bonds: B:S.511, B:S.511 ZB4.4: 7 residues within 4Å: Chain C: Y.507, S.511, I.514, Y.515 Chain D: V.433, C.437, Y.444 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:Y.507, C:I.514, C:Y.515, D:V.433 Hydrogen bonds: C:S.511, C:S.511 pi-Stacking: D:Y.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmiege, P. et al., (+)ML-SI3 bound TRPML1-V432A/A433G in a pre-open state. To Be Published

Release Date

2025-06-18

Peptides

Mucolipin-1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Mucolipin-1

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