- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.64 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 4 residues within 4Å:- Chain A: N.1089, T.1091, H.1092, F.1094
No protein-ligand interaction detected (PLIP)NAG-NAG.3: 1 residues within 4Å:- Chain A: N.1125
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 4 residues within 4Å:- Chain A: N.272, E.273, N.274
- Chain B: K.549
No protein-ligand interaction detected (PLIP)NAG-NAG.7: 4 residues within 4Å:- Chain B: N.1089, T.1091, H.1092, F.1094
No protein-ligand interaction detected (PLIP)NAG-NAG.8: 1 residues within 4Å:- Chain B: N.1125
No protein-ligand interaction detected (PLIP)NAG-NAG.9: 4 residues within 4Å:- Chain B: N.272, E.273, N.274
- Chain C: K.549
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 4 residues within 4Å:- Chain C: N.1089, T.1091, H.1092, F.1094
No protein-ligand interaction detected (PLIP)NAG-NAG.13: 1 residues within 4Å:- Chain C: N.1125
No protein-ligand interaction detected (PLIP)NAG-NAG.14: 4 residues within 4Å:- Chain A: K.549
- Chain C: N.272, E.273, N.274
No protein-ligand interaction detected (PLIP)- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.16: 2 residues within 4Å:- Chain A: N.607, Q.635
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain A: S.699, N.700
- Chain C: Y.787
Ligand excluded by PLIPNAG.18: 2 residues within 4Å:- Chain A: A.697, N.1065
Ligand excluded by PLIPNAG.19: 3 residues within 4Å:- Chain A: P.322, N.323, Q.571
Ligand excluded by PLIPNAG.20: 5 residues within 4Å:- Chain A: R.338, F.339, A.340, N.346, T.348
Ligand excluded by PLIPNAG.21: 2 residues within 4Å:- Chain A: H.331, N.335
Ligand excluded by PLIPNAG.22: 3 residues within 4Å:- Chain A: Y.25, N.27, R.206
Ligand excluded by PLIPNAG.23: 2 residues within 4Å:- Chain B: N.607, Q.635
Ligand excluded by PLIPNAG.24: 3 residues within 4Å:- Chain A: Y.787
- Chain B: S.699, N.700
Ligand excluded by PLIPNAG.25: 2 residues within 4Å:- Chain B: A.697, N.1065
Ligand excluded by PLIPNAG.26: 3 residues within 4Å:- Chain B: P.322, N.323, Q.571
Ligand excluded by PLIPNAG.27: 5 residues within 4Å:- Chain B: R.338, F.339, A.340, N.346, T.348
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain B: H.331, N.335
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain B: Y.25, N.27, R.206
Ligand excluded by PLIPNAG.30: 2 residues within 4Å:- Chain C: N.607, Q.635
Ligand excluded by PLIPNAG.31: 3 residues within 4Å:- Chain B: Y.787
- Chain C: S.699, N.700
Ligand excluded by PLIPNAG.32: 2 residues within 4Å:- Chain C: A.697, N.1065
Ligand excluded by PLIPNAG.33: 3 residues within 4Å:- Chain C: P.322, N.323, Q.571
Ligand excluded by PLIPNAG.34: 5 residues within 4Å:- Chain C: R.338, F.339, A.340, N.346, T.348
Ligand excluded by PLIPNAG.35: 2 residues within 4Å:- Chain C: H.331, N.335
Ligand excluded by PLIPNAG.36: 3 residues within 4Å:- Chain C: Y.25, N.27, R.206
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Z., Structure of SARS-CoV-2 KP.3.1.1 Spike Protein. To Be Published
- Release Date
- 2025-05-28
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.64 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Z., Structure of SARS-CoV-2 KP.3.1.1 Spike Protein. To Be Published
- Release Date
- 2025-05-28
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C