SMTL ID : 9em5.1

OPR3 variant Y364P in its monomeric form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 20 residues within 4Å: Chain A: A.36, P.37, M.38, T.39, G.70, Q.112, H.191, H.194, R.243, T.286, S.325, G.326, G.327, Y.347, G.348, R.349, F.375, Y.376 Ligands: MPD.2, CL.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:M.38, A:R.349, A:F.375, A:Y.376 Hydrogen bonds: A:P.37, A:T.39, A:G.70, A:Q.112, A:Q.112, A:H.194, A:R.243, A:R.243, A:S.325, A:G.326, A:G.327, A:G.348, A:R.349 Water bridges: A:Y.328, A:Y.328, A:L.350 Salt bridges: A:R.349

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 7 residues within 4Å: Chain A: F.80, H.194, Y.196, H.250, Y.376 Ligands: FMN.1, CL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.196

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: H.191, H.194, Y.196 Ligands: FMN.1, MPD.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerschbaumer, B. et al., Analysis of homodimer formation in 12-oxophytodienoate reductase 3 in solutio and crystallo challenges the physiological role of the dimer. Sci Rep (2024)

Release Date

2024-08-14

Peptides

12-oxophytodienoate reductase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

12-oxophytodienoate reductase 3

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