SMTL ID : 9emk.1 (2 other biounits)

DupA from legionella covalently bound to ubiquitin-based probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: [(2~{R},3~{S},4~{R},5~{S})-5-[(1-ethyl-1,2,3-triazol-4-yl)methoxy]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ethanesulfonate

01.1: 12 residues within 4Å: Chain A: T.49, L.53, I.68, S.130, L.195, C.198, K.199 Chain B: A.42, I.44, Q.49, V.70, R.72 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.199 Hydrogen bonds: A:S.130, B:Q.49 Salt bridges: A:K.199, A:K.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kloet, M.S. et al., Covalent Probes To Capture Legionella pneumophila Dup Effector Enzymes. J.Am.Chem.Soc. (2024)

Release Date

2024-10-16

Peptides

Septation initiation protein: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Septation initiation protein

Polyubiquitin-B

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