SMTL ID : 9emo.1

Crystal structure of Histidine acetyltransferase with L-arginine and coenzyme A disulfide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5NG: [[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[3-[2-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyldisulfanyl]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate

5NG.1: 27 residues within 4Å: Chain A: I.32, Y.33, V.80, L.83, R.84, V.85, R.90, G.91, K.92, G.93, V.94, A.95, G.96, Q.99, R.100, S.103, K.107, A.116, L.118, R.120, R.127, K.131, Y.132, A.326, I.328, H.329 Ligands: ARG.3 34 PLIP interactions: 33 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:I.32, A:V.80, A:L.83, A:R.84, A:V.85, A:A.116, A:Y.132 Hydrogen bonds: A:L.83, A:V.85, A:R.90, A:R.90, A:G.91, A:K.92, A:G.93, A:V.94, A:A.95, A:G.96, A:Q.99, A:K.131, A:Y.132, A:D.327, A:H.329, A:H.329 Water bridges: A:K.92, A:K.92, R.3 Salt bridges: A:R.100, A:R.100, A:K.107, A:K.107, A:K.131, A:H.329 pi-Stacking: A:H.329, A:H.329

1 x GOL: GLYCEROL

GOL.2: 4 residues within 4Å: Chain A: P.296, W.299, S.300, Y.318 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.300, A:S.300

1 x ARG: ARGININE

ARG.3: 12 residues within 4Å: Chain A: Y.33, Y.38, V.80, E.81, G.82, L.118, T.119, R.120, D.121, W.205, Q.291 Ligands: 5NG.1 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:W.205, A:W.205 Hydrogen bonds: A:Y.33, A:Y.33, A:Y.38, A:G.82, A:T.119, R.3 Water bridges: A:E.81, A:R.84, A:T.119, A:D.121, A:D.121, A:W.205, A:Q.291 Salt bridges: A:D.121 pi-Cation interactions: A:Y.33, A:W.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myllykoski, M. et al., Human NAT16 encodes histidine alpha-acetyltransferase. To Be Published

Release Date

2025-03-19

Peptides

Probable N-acetyltransferase 16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable N-acetyltransferase 16

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