SMTL ID : 9enh.1 (1 other biounit)

L-amino acid oxidase 4 (HcLAAO4) from the fungus Hebeloma cylindrosporum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 42 residues within 4Å: Chain A: G.18, A.19, G.20, I.21, G.22, G.23, I.40, E.41, A.42, S.43, G.47, G.48, R.49, L.50, V.66, G.67, A.68, M.69, R.70, Y.71, A.279, S.280, V.281, T.313, L.314, P.315, V.318, V.322, S.345, K.347, Y.404, W.459, L.464, T.465, A.468, F.469, G.497, E.498, A.505, W.506, V.507, A.510 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:A.468, A:F.469 Hydrogen bonds: A:A.19, A:G.20, A:G.22, A:G.23, A:E.41, A:A.42, A:S.43, A:G.48, A:R.49, A:R.49, A:A.68, A:M.69, A:R.70, A:R.70, A:V.281, A:V.281, A:E.498, A:W.506, A:V.507 Water bridges: A:R.70, A:R.70 Salt bridges: A:R.49, A:R.49 FAD.11: 42 residues within 4Å: Chain B: G.18, A.19, G.20, I.21, G.22, G.23, I.40, E.41, A.42, S.43, G.47, G.48, R.49, L.50, V.66, G.67, A.68, M.69, R.70, Y.71, A.279, S.280, V.281, T.313, L.314, P.315, V.318, V.322, S.345, K.347, Y.404, W.459, L.464, T.465, A.468, F.469, G.497, E.498, A.505, W.506, V.507, A.510 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:A.468, B:F.469 Hydrogen bonds: B:A.19, B:G.20, B:G.22, B:E.41, B:A.42, B:S.43, B:S.43, B:G.48, B:R.49, B:R.49, B:A.68, B:M.69, B:R.70, B:R.70, B:V.281, B:V.281, B:E.498, B:W.506, B:V.507 Water bridges: B:R.49, B:R.49, B:R.70, B:Y.404 Salt bridges: B:R.49, B:R.49

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: V.332, T.482, S.483, R.486 Chain B: R.210 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: A.421, A.422, T.423 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: E.354, G.360, Q.361, Y.446, R.450 Ligand excluded by PLIP SO4.5: 7 residues within 4Å: Chain A: Q.117, I.126, G.127, E.128, G.129, S.130, F.132 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: H.170, K.539, N.540, W.543 Ligand excluded by PLIP SO4.7: 9 residues within 4Å: Chain A: S.43, R.45, G.48, F.51, W.457, W.459, N.462, L.464, T.465 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: Y.106, Y.107, F.108, K.109, W.249 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: Y.446, D.449, R.450 Ligand excluded by PLIP SO4.12: 8 residues within 4Å: Chain B: Q.117, R.125, I.126, G.127, E.128, G.129, S.130, F.132 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: H.170, K.539, N.540, W.543 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain A: R.210 Chain B: V.332, D.479, T.482, S.483, R.486 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: Y.106, Y.107, F.108, K.109, W.249 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: P.105, R.250 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: N.140, S.141, S.142 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain B: I.417, G.418, S.456, W.457, D.458, H.461, N.462 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: Y.446, R.450 Ligand excluded by PLIP

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.10: 8 residues within 4Å: Chain A: I.417, G.418, S.456, W.457, D.458, H.461, N.462 Chain B: H.461 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.456, A:D.458

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koopmeiners, S. et al., Crystal structure and enzyme engineering of the broad substrate spectrum l-amino acid oxidase 4 from the fungus Hebeloma cylindrosporum. Febs Lett. (2024)

Release Date

2024-08-14

Peptides

L-amino acid oxidase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-amino acid oxidase 4

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