SMTL ID : 9eo0.1 (2 other biounits)

Small-Molecule Inhibitors of Programmed Cell Death-1/Programmed Death-Ligand 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x 01: ~{N}-[3-[3-[[5-[(2-hydroxyethylamino)methyl]pyridin-2-yl]carbonylamino]-2-methyl-phenyl]-2-methyl-phenyl]-5-[[3-(methylsulfonylamino)propylamino]methyl]pyridine-2-carboxamide

01.1: 28 residues within 4Å: Chain A: I.40, V.41, Y.42, N.49, Q.52, V.62, M.101, I.102, S.103, A.107, D.108, Y.109, K.110 Chain B: A.4, T.6, V.7, I.40, V.41, Y.42, N.49, Q.52, M.101, I.102, S.103, A.107, D.108, Y.109, K.110 17 PLIP interactions: 8 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:I.40, A:Y.42, A:M.101, A:Y.109, B:I.40, B:Y.42, B:M.101, B:Y.109 Hydrogen bonds: A:Q.52, A:D.108, B:T.6, B:T.6, B:Q.52, B:D.108 Water bridges: A:K.110 pi-Stacking: A:Y.42, B:Y.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hec-Galazka, A. et al., Nonsymmetrically Substituted 1,1'-Biphenyl-Based Small Molecule Inhibitors of the PD-1/PD-L1 Interaction. Acs Med.Chem.Lett. (2024)

Release Date

2024-06-19

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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