SMTL ID : 9eo4.1

Outward-open structure of human dopamine transporter bound to cocaine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 10 residues within 4Å: Chain A: I.67, L.70, L.71, I.74, T.271, Y.274, V.275, T.278, V.348, I.352 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.67, A:L.70, A:I.74, A:T.271, A:Y.274, A:V.275, A:V.348, A:I.352 CLR.3: 12 residues within 4Å: Chain A: L.150, F.154, L.434, F.438, L.440, L.441, F.448, F.451, I.452, A.455, L.459 Ligands: CLR.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.150, A:F.154, A:L.434, A:F.438, A:F.438, A:F.438, A:L.440, A:L.441, A:F.448, A:F.451, A:A.455 CLR.4: 15 residues within 4Å: Chain A: Y.151, F.154, I.230, D.231, L.233, L.459, F.462, V.471, L.474, L.475, W.556, L.560, I.564, S.567 Ligands: CLR.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.154, A:F.154, A:I.230, A:L.233, A:F.462, A:F.462, A:F.462, A:V.471, A:L.475, A:W.556, A:L.560, A:L.560, A:I.564

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2: 17 residues within 4Å: Chain A: F.86, L.99, Y.102, L.103, M.106, V.107, M.111, Y.343, I.347, T.350, S.351, S.354, L.355, F.358, S.517, Y.519, W.520 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.99, A:M.106, A:V.107, A:M.111, A:I.347, A:T.350, A:L.355, A:F.358, A:Y.519, A:W.520 Hydrogen bonds: A:Y.343, A:S.517, A:W.520

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 7 residues within 4Å: Chain A: G.75, F.76, V.78, D.79, L.418, D.421, S.422 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.76, A:S.422

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: Y.102, Q.317, S.321, S.354, S.357 Ligand excluded by PLIP

1 x COC: COCAINE(Non-covalent)

COC.7: 19 residues within 4Å: Chain A: F.76, A.77, D.79, A.81, N.82, S.149, V.152, G.153, F.155, Y.156, N.157, F.320, S.321, L.322, G.323, F.326, S.422, A.423, G.426 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.76, A:V.152, A:V.152, A:Y.156, A:Y.156, A:F.326, A:F.326 Salt bridges: A:D.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nielsen, J.C. et al., Structure of the human dopamine transporter in complex with cocaine. Nature (2024)

Release Date

2024-07-03

Peptides

Sodium-dependent dopamine transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent dopamine transporter