SMTL ID : 9eok.1

Minus end of the vertebrate gamma-tubulin ring complex-capped microtubule

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-23-19-mer

Ligands

23 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 22 residues within 4Å: Chain A: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain B: K.252 Ligands: MG.2 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.11, A:Q.15, A:N.101, A:N.101, A:S.140, A:G.144, A:T.145, A:G.146, A:E.183, A:N.206, A:Y.224, A:N.228, A:N.228, A:N.228 pi-Stacking: A:Y.224, A:Y.224 Salt bridges: B:K.252, B:K.252, B:K.252 GTP.5: 22 residues within 4Å: Chain C: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain Q: K.252 Ligands: MG.6 19 PLIP interactions: 16 interactions with chain C, 3 interactions with chain Q Hydrogen bonds: C:Q.11, C:Q.15, C:N.101, C:N.101, C:S.140, C:G.144, C:T.145, C:G.146, C:E.183, C:N.206, C:Y.224, C:N.228, C:N.228, C:N.228 pi-Stacking: C:Y.224, C:Y.224 Salt bridges: Q:K.252, Q:K.252, Q:K.252 GTP.7: 22 residues within 4Å: Chain D: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain R: K.252 Ligands: MG.8 19 PLIP interactions: 16 interactions with chain D, 3 interactions with chain R Hydrogen bonds: D:Q.11, D:Q.15, D:N.101, D:N.101, D:S.140, D:G.144, D:T.145, D:G.146, D:E.183, D:N.206, D:Y.224, D:N.228, D:N.228, D:N.228 pi-Stacking: D:Y.224, D:Y.224 Salt bridges: R:K.252, R:K.252, R:K.252 GTP.9: 22 residues within 4Å: Chain E: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain F: K.252 Ligands: MG.10 19 PLIP interactions: 3 interactions with chain F, 16 interactions with chain E Salt bridges: F:K.252, F:K.252, F:K.252 Hydrogen bonds: E:Q.11, E:Q.15, E:N.101, E:N.101, E:S.140, E:G.144, E:T.145, E:G.146, E:E.183, E:N.206, E:Y.224, E:N.228, E:N.228, E:N.228 pi-Stacking: E:Y.224, E:Y.224 GTP.13: 22 residues within 4Å: Chain G: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain S: K.252 Ligands: MG.14 19 PLIP interactions: 16 interactions with chain G, 3 interactions with chain S Hydrogen bonds: G:Q.11, G:Q.15, G:N.101, G:N.101, G:S.140, G:G.144, G:T.145, G:G.146, G:E.183, G:N.206, G:Y.224, G:N.228, G:N.228, G:N.228 pi-Stacking: G:Y.224, G:Y.224 Salt bridges: S:K.252, S:K.252, S:K.252 GTP.15: 22 residues within 4Å: Chain H: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain T: K.252 Ligands: MG.16 19 PLIP interactions: 16 interactions with chain H, 3 interactions with chain T Hydrogen bonds: H:Q.11, H:Q.15, H:N.101, H:N.101, H:S.140, H:G.144, H:T.145, H:G.146, H:E.183, H:N.206, H:Y.224, H:N.228, H:N.228, H:N.228 pi-Stacking: H:Y.224, H:Y.224 Salt bridges: T:K.252, T:K.252, T:K.252 GTP.17: 22 residues within 4Å: Chain I: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain U: K.252 Ligands: MG.18 19 PLIP interactions: 16 interactions with chain I, 3 interactions with chain U Hydrogen bonds: I:Q.11, I:Q.15, I:N.101, I:N.101, I:S.140, I:G.144, I:T.145, I:G.146, I:E.183, I:N.206, I:Y.224, I:N.228, I:N.228, I:N.228 pi-Stacking: I:Y.224, I:Y.224 Salt bridges: U:K.252, U:K.252, U:K.252 GTP.19: 22 residues within 4Å: Chain J: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain V: K.252 Ligands: MG.20 19 PLIP interactions: 16 interactions with chain J, 3 interactions with chain V Hydrogen bonds: J:Q.11, J:Q.15, J:N.101, J:N.101, J:S.140, J:G.144, J:T.145, J:G.146, J:E.183, J:N.206, J:Y.224, J:N.228, J:N.228, J:N.228 pi-Stacking: J:Y.224, J:Y.224 Salt bridges: V:K.252, V:K.252, V:K.252 GTP.21: 22 residues within 4Å: Chain K: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain W: K.252 Ligands: MG.22 19 PLIP interactions: 16 interactions with chain K, 3 interactions with chain W Hydrogen bonds: K:Q.11, K:Q.15, K:N.101, K:N.101, K:S.140, K:G.144, K:T.145, K:G.146, K:E.183, K:N.206, K:Y.224, K:N.228, K:N.228, K:N.228 pi-Stacking: K:Y.224, K:Y.224 Salt bridges: W:K.252, W:K.252, W:K.252 GTP.23: 22 residues within 4Å: Chain L: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain X: K.252 Ligands: MG.24 19 PLIP interactions: 16 interactions with chain L, 3 interactions with chain X Hydrogen bonds: L:Q.11, L:Q.15, L:N.101, L:N.101, L:S.140, L:G.144, L:T.145, L:G.146, L:E.183, L:N.206, L:Y.224, L:N.228, L:N.228, L:N.228 pi-Stacking: L:Y.224, L:Y.224 Salt bridges: X:K.252, X:K.252, X:K.252 GTP.25: 22 residues within 4Å: Chain M: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain Y: K.252 Ligands: MG.26 19 PLIP interactions: 16 interactions with chain M, 3 interactions with chain Y Hydrogen bonds: M:Q.11, M:Q.15, M:N.101, M:N.101, M:S.140, M:G.144, M:T.145, M:G.146, M:E.183, M:N.206, M:Y.224, M:N.228, M:N.228, M:N.228 pi-Stacking: M:Y.224, M:Y.224 Salt bridges: Y:K.252, Y:K.252, Y:K.252 GTP.27: 22 residues within 4Å: Chain N: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Chain Z: K.252 Ligands: MG.28 19 PLIP interactions: 16 interactions with chain N, 3 interactions with chain Z Hydrogen bonds: N:Q.11, N:Q.15, N:N.101, N:N.101, N:S.140, N:G.144, N:T.145, N:G.146, N:E.183, N:N.206, N:Y.224, N:N.228, N:N.228, N:N.228 pi-Stacking: N:Y.224, N:Y.224 Salt bridges: Z:K.252, Z:K.252, Z:K.252 GTP.29: 22 residues within 4Å: Chain 0: K.252 Chain O: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.30 19 PLIP interactions: 16 interactions with chain O, 3 interactions with chain 0 Hydrogen bonds: O:Q.11, O:Q.15, O:N.101, O:N.101, O:S.140, O:G.144, O:T.145, O:G.146, O:E.183, O:N.206, O:Y.224, O:N.228, O:N.228, O:N.228 pi-Stacking: O:Y.224, O:Y.224 Salt bridges: 0:K.252, 0:K.252, 0:K.252 GTP.31: 22 residues within 4Å: Chain 1: K.252 Chain P: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.32 19 PLIP interactions: 16 interactions with chain P, 3 interactions with chain 1 Hydrogen bonds: P:Q.11, P:Q.15, P:N.101, P:N.101, P:S.140, P:G.144, P:T.145, P:G.146, P:E.183, P:N.206, P:Y.224, P:N.228, P:N.228, P:N.228 pi-Stacking: P:Y.224, P:Y.224 Salt bridges: 1:K.252, 1:K.252, 1:K.252 GTP.57: 22 residues within 4Å: Chain 2: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.58 Chain b: K.252 19 PLIP interactions: 16 interactions with chain 2, 3 interactions with chain b Hydrogen bonds: 2:Q.11, 2:Q.15, 2:N.101, 2:N.101, 2:S.140, 2:G.144, 2:T.145, 2:G.146, 2:E.183, 2:N.206, 2:Y.224, 2:N.228, 2:N.228, 2:N.228 pi-Stacking: 2:Y.224, 2:Y.224 Salt bridges: b:K.252, b:K.252, b:K.252 GTP.59: 22 residues within 4Å: Chain 3: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.60 Chain c: K.252 19 PLIP interactions: 16 interactions with chain 3, 3 interactions with chain c Hydrogen bonds: 3:Q.11, 3:Q.15, 3:N.101, 3:N.101, 3:S.140, 3:G.144, 3:T.145, 3:G.146, 3:E.183, 3:N.206, 3:Y.224, 3:N.228, 3:N.228, 3:N.228 pi-Stacking: 3:Y.224, 3:Y.224 Salt bridges: c:K.252, c:K.252, c:K.252 GTP.61: 22 residues within 4Å: Chain 4: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.62 Chain d: K.252 19 PLIP interactions: 16 interactions with chain 4, 3 interactions with chain d Hydrogen bonds: 4:Q.11, 4:Q.15, 4:N.101, 4:N.101, 4:S.140, 4:G.144, 4:T.145, 4:G.146, 4:E.183, 4:N.206, 4:Y.224, 4:N.228, 4:N.228, 4:N.228 pi-Stacking: 4:Y.224, 4:Y.224 Salt bridges: d:K.252, d:K.252, d:K.252 GTP.63: 22 residues within 4Å: Chain 5: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.64 Chain e: K.252 19 PLIP interactions: 16 interactions with chain 5, 3 interactions with chain e Hydrogen bonds: 5:Q.11, 5:Q.15, 5:N.101, 5:N.101, 5:S.140, 5:G.144, 5:T.145, 5:G.146, 5:E.183, 5:N.206, 5:Y.224, 5:N.228, 5:N.228, 5:N.228 pi-Stacking: 5:Y.224, 5:Y.224 Salt bridges: e:K.252, e:K.252, e:K.252 GTP.65: 22 residues within 4Å: Chain 6: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.66 Chain f: K.252 19 PLIP interactions: 16 interactions with chain 6, 3 interactions with chain f Hydrogen bonds: 6:Q.11, 6:Q.15, 6:N.101, 6:N.101, 6:S.140, 6:G.144, 6:T.145, 6:G.146, 6:E.183, 6:N.206, 6:Y.224, 6:N.228, 6:N.228, 6:N.228 pi-Stacking: 6:Y.224, 6:Y.224 Salt bridges: f:K.252, f:K.252, f:K.252 GTP.67: 21 residues within 4Å: Chain 7: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.68 16 PLIP interactions: 16 interactions with chain 7 Hydrogen bonds: 7:Q.11, 7:Q.15, 7:N.101, 7:N.101, 7:S.140, 7:G.144, 7:T.145, 7:G.146, 7:E.183, 7:N.206, 7:Y.224, 7:N.228, 7:N.228, 7:N.228 pi-Stacking: 7:Y.224, 7:Y.224 GTP.69: 21 residues within 4Å: Chain 8: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.70 16 PLIP interactions: 16 interactions with chain 8 Hydrogen bonds: 8:Q.11, 8:Q.15, 8:N.101, 8:N.101, 8:S.140, 8:G.144, 8:T.145, 8:G.146, 8:E.183, 8:N.206, 8:Y.224, 8:N.228, 8:N.228, 8:N.228 pi-Stacking: 8:Y.224, 8:Y.224 GTP.71: 21 residues within 4Å: Chain 9: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 Ligands: MG.72 16 PLIP interactions: 16 interactions with chain 9 Hydrogen bonds: 9:Q.11, 9:Q.15, 9:N.101, 9:N.101, 9:S.140, 9:G.144, 9:T.145, 9:G.146, 9:E.183, 9:N.206, 9:Y.224, 9:N.228, 9:N.228, 9:N.228 pi-Stacking: 9:Y.224, 9:Y.224 GTP.73: 21 residues within 4Å: Ligands: MG.74 Chain a: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, T.179, E.183, N.206, Y.224, L.227, N.228 16 PLIP interactions: 16 interactions with chain a Hydrogen bonds: a:Q.11, a:Q.15, a:N.101, a:N.101, a:S.140, a:G.144, a:T.145, a:G.146, a:E.183, a:N.206, a:Y.224, a:N.228, a:N.228, a:N.228 pi-Stacking: a:Y.224, a:Y.224

23 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.69, T.145 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain C: D.69, T.145 Ligands: GTP.5 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain D: D.69, T.145 Ligands: GTP.7 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain E: D.69, T.145 Ligands: GTP.9 No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain G: D.69, T.145 Ligands: GTP.13 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain H: D.69, T.145 Ligands: GTP.15 No protein-ligand interaction detected (PLIP) MG.18: 3 residues within 4Å: Chain I: D.69, T.145 Ligands: GTP.17 No protein-ligand interaction detected (PLIP) MG.20: 3 residues within 4Å: Chain J: D.69, T.145 Ligands: GTP.19 No protein-ligand interaction detected (PLIP) MG.22: 3 residues within 4Å: Chain K: D.69, T.145 Ligands: GTP.21 No protein-ligand interaction detected (PLIP) MG.24: 3 residues within 4Å: Chain L: D.69, T.145 Ligands: GTP.23 No protein-ligand interaction detected (PLIP) MG.26: 3 residues within 4Å: Chain M: D.69, T.145 Ligands: GTP.25 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain N: D.69, T.145 Ligands: GTP.27 No protein-ligand interaction detected (PLIP) MG.30: 3 residues within 4Å: Chain O: D.69, T.145 Ligands: GTP.29 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain P: D.69, T.145 Ligands: GTP.31 No protein-ligand interaction detected (PLIP) MG.58: 3 residues within 4Å: Chain 2: D.69, T.145 Ligands: GTP.57 No protein-ligand interaction detected (PLIP) MG.60: 3 residues within 4Å: Chain 3: D.69, T.145 Ligands: GTP.59 No protein-ligand interaction detected (PLIP) MG.62: 3 residues within 4Å: Chain 4: D.69, T.145 Ligands: GTP.61 No protein-ligand interaction detected (PLIP) MG.64: 3 residues within 4Å: Chain 5: D.69, T.145 Ligands: GTP.63 No protein-ligand interaction detected (PLIP) MG.66: 3 residues within 4Å: Chain 6: D.69, T.145 Ligands: GTP.65 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain 7: D.69, T.145 Ligands: GTP.67 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain 8: D.69, T.145 Ligands: GTP.69 No protein-ligand interaction detected (PLIP) MG.72: 3 residues within 4Å: Chain 9: D.69, T.145 Ligands: GTP.71 No protein-ligand interaction detected (PLIP) MG.74: 3 residues within 4Å: Ligands: GTP.73 Chain a: D.69, T.145 No protein-ligand interaction detected (PLIP)

19 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 18 residues within 4Å: Chain B: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 Chain E: L.248 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:Q.11, B:Q.11, B:C.12, B:Q.15, B:S.138, B:G.142, B:T.143, B:T.143, B:T.143, B:T.143, B:G.144, B:D.177, B:T.178, B:E.181, B:N.204, B:Y.222, B:N.226, B:N.226, B:N.226 pi-Stacking: B:Y.222, B:Y.222 GDP.12: 17 residues within 4Å: Chain F: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain F Hydrogen bonds: F:Q.11, F:Q.11, F:C.12, F:Q.15, F:S.138, F:G.142, F:T.143, F:T.143, F:T.143, F:T.143, F:G.144, F:D.177, F:T.178, F:E.181, F:N.204, F:Y.222, F:N.226, F:N.226, F:N.226 pi-Stacking: F:Y.222, F:Y.222 GDP.33: 18 residues within 4Å: Chain 2: L.248 Chain Q: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:Q.11, Q:C.12, Q:Q.15, Q:S.138, Q:G.142, Q:T.143, Q:T.143, Q:T.143, Q:T.143, Q:G.144, Q:D.177, Q:T.178, Q:E.181, Q:N.204, Q:Y.222, Q:N.226, Q:N.226, Q:N.226 pi-Stacking: Q:Y.222, Q:Y.222 GDP.35: 18 residues within 4Å: Chain 3: L.248 Chain R: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain R Hydrogen bonds: R:Q.11, R:Q.11, R:C.12, R:Q.15, R:S.138, R:G.142, R:T.143, R:T.143, R:T.143, R:T.143, R:G.144, R:D.177, R:T.178, R:E.181, R:N.204, R:Y.222, R:N.226, R:N.226, R:N.226 pi-Stacking: R:Y.222, R:Y.222 GDP.37: 18 residues within 4Å: Chain 4: L.248 Chain S: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain S Hydrogen bonds: S:Q.11, S:Q.11, S:C.12, S:Q.15, S:S.138, S:G.142, S:T.143, S:T.143, S:T.143, S:T.143, S:G.144, S:D.177, S:T.178, S:E.181, S:N.204, S:Y.222, S:N.226, S:N.226, S:N.226 pi-Stacking: S:Y.222, S:Y.222 GDP.39: 18 residues within 4Å: Chain 5: L.248 Chain T: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain T Hydrogen bonds: T:Q.11, T:Q.11, T:C.12, T:Q.15, T:S.138, T:G.142, T:T.143, T:T.143, T:T.143, T:T.143, T:G.144, T:D.177, T:T.178, T:E.181, T:N.204, T:Y.222, T:N.226, T:N.226, T:N.226 pi-Stacking: T:Y.222, T:Y.222 GDP.42: 18 residues within 4Å: Chain 6: L.248 Chain U: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain U Hydrogen bonds: U:Q.11, U:Q.11, U:C.12, U:Q.15, U:S.138, U:G.142, U:T.143, U:T.143, U:T.143, U:T.143, U:G.144, U:D.177, U:T.178, U:E.181, U:N.204, U:Y.222, U:N.226, U:N.226, U:N.226 pi-Stacking: U:Y.222, U:Y.222 GDP.43: 18 residues within 4Å: Chain 7: L.248 Chain V: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain V Hydrogen bonds: V:Q.11, V:Q.11, V:C.12, V:Q.15, V:S.138, V:G.142, V:T.143, V:T.143, V:T.143, V:T.143, V:G.144, V:D.177, V:T.178, V:E.181, V:N.204, V:Y.222, V:N.226, V:N.226, V:N.226 pi-Stacking: V:Y.222, V:Y.222 GDP.45: 18 residues within 4Å: Chain 8: L.248 Chain W: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain W Hydrogen bonds: W:Q.11, W:Q.11, W:C.12, W:Q.15, W:S.138, W:G.142, W:T.143, W:T.143, W:T.143, W:T.143, W:G.144, W:D.177, W:T.178, W:E.181, W:N.204, W:Y.222, W:N.226, W:N.226, W:N.226 pi-Stacking: W:Y.222, W:Y.222 GDP.47: 18 residues within 4Å: Chain 9: L.248 Chain X: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain X Hydrogen bonds: X:Q.11, X:Q.11, X:C.12, X:Q.15, X:S.138, X:G.142, X:T.143, X:T.143, X:T.143, X:T.143, X:G.144, X:D.177, X:T.178, X:E.181, X:N.204, X:Y.222, X:N.226, X:N.226, X:N.226 pi-Stacking: X:Y.222, X:Y.222 GDP.49: 18 residues within 4Å: Chain Y: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 Chain a: L.248 21 PLIP interactions: 21 interactions with chain Y Hydrogen bonds: Y:Q.11, Y:Q.11, Y:C.12, Y:Q.15, Y:S.138, Y:G.142, Y:T.143, Y:T.143, Y:T.143, Y:T.143, Y:G.144, Y:D.177, Y:T.178, Y:E.181, Y:N.204, Y:Y.222, Y:N.226, Y:N.226, Y:N.226 pi-Stacking: Y:Y.222, Y:Y.222 GDP.51: 17 residues within 4Å: Chain Z: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain Z Hydrogen bonds: Z:Q.11, Z:Q.11, Z:C.12, Z:Q.15, Z:S.138, Z:G.142, Z:T.143, Z:T.143, Z:T.143, Z:T.143, Z:G.144, Z:D.177, Z:T.178, Z:E.181, Z:N.204, Z:Y.222, Z:N.226, Z:N.226, Z:N.226 pi-Stacking: Z:Y.222, Z:Y.222 GDP.53: 17 residues within 4Å: Chain 0: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain 0 Hydrogen bonds: 0:Q.11, 0:Q.11, 0:C.12, 0:Q.15, 0:S.138, 0:G.142, 0:T.143, 0:T.143, 0:T.143, 0:T.143, 0:G.144, 0:D.177, 0:T.178, 0:E.181, 0:N.204, 0:Y.222, 0:N.226, 0:N.226, 0:N.226 pi-Stacking: 0:Y.222, 0:Y.222 GDP.55: 17 residues within 4Å: Chain 1: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain 1 Hydrogen bonds: 1:Q.11, 1:Q.11, 1:C.12, 1:Q.15, 1:S.138, 1:G.142, 1:T.143, 1:T.143, 1:T.143, 1:T.143, 1:G.144, 1:D.177, 1:T.178, 1:E.181, 1:N.204, 1:Y.222, 1:N.226, 1:N.226, 1:N.226 pi-Stacking: 1:Y.222, 1:Y.222 GDP.75: 17 residues within 4Å: Chain b: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain b Hydrogen bonds: b:Q.11, b:Q.11, b:C.12, b:Q.15, b:S.138, b:G.142, b:T.143, b:T.143, b:T.143, b:T.143, b:G.144, b:D.177, b:T.178, b:E.181, b:N.204, b:Y.222, b:N.226, b:N.226, b:N.226 pi-Stacking: b:Y.222, b:Y.222 GDP.77: 17 residues within 4Å: Chain c: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain c Hydrogen bonds: c:Q.11, c:Q.11, c:C.12, c:Q.15, c:S.138, c:G.142, c:T.143, c:T.143, c:T.143, c:T.143, c:G.144, c:D.177, c:T.178, c:E.181, c:N.204, c:Y.222, c:N.226, c:N.226, c:N.226 pi-Stacking: c:Y.222, c:Y.222 GDP.79: 17 residues within 4Å: Chain d: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain d Hydrogen bonds: d:Q.11, d:Q.11, d:C.12, d:Q.15, d:S.138, d:G.142, d:T.143, d:T.143, d:T.143, d:T.143, d:G.144, d:D.177, d:T.178, d:E.181, d:N.204, d:Y.222, d:N.226, d:N.226, d:N.226 pi-Stacking: d:Y.222, d:Y.222 GDP.81: 17 residues within 4Å: Chain e: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain e Hydrogen bonds: e:Q.11, e:Q.11, e:C.12, e:Q.15, e:S.138, e:G.142, e:T.143, e:T.143, e:T.143, e:T.143, e:G.144, e:D.177, e:T.178, e:E.181, e:N.204, e:Y.222, e:N.226, e:N.226, e:N.226 pi-Stacking: e:Y.222, e:Y.222 GDP.83: 17 residues within 4Å: Chain f: G.10, Q.11, C.12, Q.15, N.99, S.138, G.140, G.141, G.142, T.143, G.144, D.177, T.178, E.181, N.204, Y.222, N.226 21 PLIP interactions: 21 interactions with chain f Hydrogen bonds: f:Q.11, f:Q.11, f:C.12, f:Q.15, f:S.138, f:G.142, f:T.143, f:T.143, f:T.143, f:T.143, f:G.144, f:D.177, f:T.178, f:E.181, f:N.204, f:Y.222, f:N.226, f:N.226, f:N.226 pi-Stacking: f:Y.222, f:Y.222

19 x TA1: TAXOL(Non-covalent)

TA1.4: 19 residues within 4Å: Chain B: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:E.22, B:V.23, B:D.26, B:L.215, B:H.227, B:A.231, B:F.270, B:F.270, B:P.358, B:L.361 Hydrogen bonds: B:T.274, B:Q.279, B:R.359 pi-Stacking: B:H.227 TA1.11: 19 residues within 4Å: Chain F: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:E.22, F:V.23, F:D.26, F:L.215, F:H.227, F:A.231, F:F.270, F:F.270, F:P.358, F:L.361 Hydrogen bonds: F:T.274, F:Q.279, F:R.359 pi-Stacking: F:H.227 TA1.34: 19 residues within 4Å: Chain Q: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain Q Hydrophobic interactions: Q:E.22, Q:V.23, Q:D.26, Q:L.215, Q:H.227, Q:A.231, Q:F.270, Q:F.270, Q:P.358, Q:L.361 Hydrogen bonds: Q:T.274, Q:Q.279, Q:R.359 pi-Stacking: Q:H.227 TA1.36: 19 residues within 4Å: Chain R: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain R Hydrophobic interactions: R:E.22, R:V.23, R:D.26, R:L.215, R:H.227, R:A.231, R:F.270, R:F.270, R:P.358, R:L.361 Hydrogen bonds: R:T.274, R:Q.279, R:R.359 pi-Stacking: R:H.227 TA1.38: 20 residues within 4Å: Chain R: T.55 Chain S: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain S Hydrophobic interactions: S:E.22, S:V.23, S:D.26, S:L.215, S:H.227, S:A.231, S:F.270, S:F.270, S:P.358, S:L.361 Hydrogen bonds: S:T.274, S:Q.279, S:R.359 pi-Stacking: S:H.227 TA1.40: 19 residues within 4Å: Chain T: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain T Hydrophobic interactions: T:E.22, T:V.23, T:D.26, T:L.215, T:H.227, T:A.231, T:F.270, T:F.270, T:P.358, T:L.361 Hydrogen bonds: T:T.274, T:Q.279, T:R.359 pi-Stacking: T:H.227 TA1.41: 19 residues within 4Å: Chain U: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain U Hydrophobic interactions: U:E.22, U:V.23, U:D.26, U:L.215, U:H.227, U:A.231, U:F.270, U:F.270, U:P.358, U:L.361 Hydrogen bonds: U:T.274, U:Q.279, U:R.359 pi-Stacking: U:H.227 TA1.44: 19 residues within 4Å: Chain V: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain V Hydrophobic interactions: V:E.22, V:V.23, V:D.26, V:L.215, V:H.227, V:A.231, V:F.270, V:F.270, V:P.358, V:L.361 Hydrogen bonds: V:T.274, V:Q.279, V:R.359 pi-Stacking: V:H.227 TA1.46: 19 residues within 4Å: Chain W: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain W Hydrophobic interactions: W:E.22, W:V.23, W:D.26, W:L.215, W:H.227, W:A.231, W:F.270, W:F.270, W:P.358, W:L.361 Hydrogen bonds: W:T.274, W:Q.279, W:R.359 pi-Stacking: W:H.227 TA1.48: 19 residues within 4Å: Chain X: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain X Hydrophobic interactions: X:E.22, X:V.23, X:D.26, X:L.215, X:H.227, X:A.231, X:F.270, X:F.270, X:P.358, X:L.361 Hydrogen bonds: X:T.274, X:Q.279, X:R.359 pi-Stacking: X:H.227 TA1.50: 19 residues within 4Å: Chain Y: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain Y Hydrophobic interactions: Y:E.22, Y:V.23, Y:D.26, Y:L.215, Y:H.227, Y:A.231, Y:F.270, Y:F.270, Y:P.358, Y:L.361 Hydrogen bonds: Y:T.274, Y:Q.279, Y:R.359 pi-Stacking: Y:H.227 TA1.52: 19 residues within 4Å: Chain Z: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 15 PLIP interactions: 14 interactions with chain Z, 1 interactions with chain Y Hydrophobic interactions: Z:E.22, Z:V.23, Z:D.26, Z:L.215, Z:H.227, Z:A.231, Z:F.270, Z:F.270, Z:P.358, Z:L.361 Hydrogen bonds: Z:T.274, Z:Q.279, Z:R.359 pi-Stacking: Z:H.227 Salt bridges: Y:K.58 TA1.54: 19 residues within 4Å: Chain 0: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain 0 Hydrophobic interactions: 0:E.22, 0:V.23, 0:D.26, 0:L.215, 0:H.227, 0:A.231, 0:F.270, 0:F.270, 0:P.358, 0:L.361 Hydrogen bonds: 0:T.274, 0:Q.279, 0:R.359 pi-Stacking: 0:H.227 TA1.56: 19 residues within 4Å: Chain 1: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain 1 Hydrophobic interactions: 1:E.22, 1:V.23, 1:D.26, 1:L.215, 1:H.227, 1:A.231, 1:F.270, 1:F.270, 1:P.358, 1:L.361 Hydrogen bonds: 1:T.274, 1:Q.279, 1:R.359 pi-Stacking: 1:H.227 TA1.76: 19 residues within 4Å: Chain b: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain b Hydrophobic interactions: b:E.22, b:V.23, b:D.26, b:L.215, b:H.227, b:A.231, b:F.270, b:F.270, b:P.358, b:L.361 Hydrogen bonds: b:T.274, b:Q.279, b:R.359 pi-Stacking: b:H.227 TA1.78: 19 residues within 4Å: Chain c: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain c Hydrophobic interactions: c:E.22, c:V.23, c:D.26, c:L.215, c:H.227, c:A.231, c:F.270, c:F.270, c:P.358, c:L.361 Hydrogen bonds: c:T.274, c:Q.279, c:R.359 pi-Stacking: c:H.227 TA1.80: 19 residues within 4Å: Chain d: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain d Hydrophobic interactions: d:E.22, d:V.23, d:D.26, d:L.215, d:H.227, d:A.231, d:F.270, d:F.270, d:P.358, d:L.361 Hydrogen bonds: d:T.274, d:Q.279, d:R.359 pi-Stacking: d:H.227 TA1.82: 19 residues within 4Å: Chain e: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain e Hydrophobic interactions: e:E.22, e:V.23, e:D.26, e:L.215, e:H.227, e:A.231, e:F.270, e:F.270, e:P.358, e:L.361 Hydrogen bonds: e:T.274, e:Q.279, e:R.359 pi-Stacking: e:H.227 TA1.84: 19 residues within 4Å: Chain f: E.22, V.23, D.26, E.27, L.215, D.224, H.227, A.231, S.234, F.270, P.272, L.273, T.274, R.276, Q.279, P.358, R.359, G.360, L.361 14 PLIP interactions: 14 interactions with chain f Hydrophobic interactions: f:E.22, f:V.23, f:D.26, f:L.215, f:H.227, f:A.231, f:F.270, f:F.270, f:P.358, f:L.361 Hydrogen bonds: f:T.274, f:Q.279, f:R.359 pi-Stacking: f:H.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vermeulen, B.J. et al., gamma-TuRC asymmetry induces local protofilament mismatch at the RanGTP-stimulated microtubule minus end. Embo J. (2024)

Release Date

2024-11-06

Peptides

Tubulin alpha chain: ACDEGHIJKLMNOP23456789a
Tubulin beta-4 chain: BFQRSTUVWXYZ01bcdef

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

D
D

E
E

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

B
B

F
F

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

b
o

c
p

d
q

e
r

f
s

Tubulin alpha chain

Tubulin beta-4 chain

Related Entries With Identical Sequence