SMTL ID : 9epo.1

High resolution structure of FZD7 in inactive conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x Y01: CHOLESTEROL HEMISUCCINATE

Y01.1: 17 residues within 4Å: Chain A: L.267, D.269, R.271, F.273, I.281, F.282, G.285, F.337 Chain B: M.289, L.300, R.303, A.304, G.326, I.329 Ligands: Y01.3, Y01.4, Y01.5 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.267, A:F.273, A:F.282, A:F.337, A:F.337, B:L.300, B:R.303, B:I.329 Hydrogen bonds: B:G.326 Salt bridges: B:K.324 Y01.3: 18 residues within 4Å: Chain A: T.322, K.323, K.324, E.325, T.328, I.329, M.332 Chain B: M.332, V.333, F.336, F.337, Q.370, H.373, W.377 Ligands: Y01.1, Y01.4, Y01.5, PLM.6 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.333, B:F.336, B:F.337, B:W.377, B:W.377, B:W.377, A:E.325, A:I.329 Hydrogen bonds: B:Q.370 Salt bridges: A:K.323 Y01.4: 18 residues within 4Å: Chain A: M.332, V.333, F.336, F.337, Q.370, H.373, W.377 Chain B: T.322, K.323, K.324, E.325, T.328, I.329, M.332 Ligands: Y01.1, PLM.2, Y01.3, Y01.5 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.333, A:F.336, A:F.337, A:W.377, A:W.377, A:W.377, B:E.325, B:I.329 Hydrogen bonds: A:Q.370 Salt bridges: B:K.323 Y01.5: 17 residues within 4Å: Chain A: M.289, L.300, R.303, A.304, G.326, I.329 Chain B: L.267, D.269, R.271, F.273, I.281, F.282, G.285, F.337 Ligands: Y01.1, Y01.3, Y01.4 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.267, B:F.273, B:F.282, B:F.337, B:F.337, A:L.300, A:R.303, A:I.329 Hydrogen bonds: A:G.326 Salt bridges: A:K.324

2 x PLM: PALMITIC ACID

PLM.2: 9 residues within 4Å: Chain A: M.332, F.336, Q.370, H.373, L.374, W.377, A.381, T.384 Ligands: Y01.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.336, A:H.373, A:A.381, A:T.384 Salt bridges: A:H.373 PLM.6: 9 residues within 4Å: Chain B: M.332, F.336, Q.370, H.373, L.374, W.377, A.381, T.384 Ligands: Y01.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.336, B:H.373, B:A.381, B:T.384 Salt bridges: B:H.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bous, J. et al., high-resolution structural characterization of FZD7 unravels the importance of water network and cholesterol for class F GPCRs dynamic and activation. To Be Published

Release Date

2024-10-02

Peptides

Frizzled-7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
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Frizzled-7

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