SMTL ID : 9etn.1

Crystal structure of murine CRTAC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 3 residues within 4Å: Chain A: Q.242, N.244, T.246 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.33, D.35, D.37, D.39, E.41, K.55 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.33, A:D.35, A:D.37, A:D.39, A:E.41 CA.3: 6 residues within 4Å: Chain A: D.92, D.94, D.96, R.98, E.100, K.122 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.92, A:D.94, A:D.96, A:R.98, A:E.100 CA.4: 5 residues within 4Å: Chain A: D.270, N.272, D.274, K.276, D.278 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.270, A:D.274, A:K.276, A:D.278, H2O.1 CA.5: 5 residues within 4Å: Chain A: D.323, D.325, D.327, E.329, E.331 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.323, A:D.325, A:D.327, A:E.329, A:E.331 CA.6: 5 residues within 4Å: Chain A: D.382, D.384, D.386, M.388, D.390 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.382, A:D.384, A:D.386, A:M.388, A:D.390 CA.7: 6 residues within 4Å: Chain A: D.530, T.531, E.533, N.550, T.551, S.554 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.530, A:T.531, A:T.551, A:S.554, H2O.2

3 x K: POTASSIUM ION(Non-covalent)

K.8: 6 residues within 4Å: Chain A: G.46, G.49, N.51, R.79, D.80, G.83 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.46, A:G.49, A:D.80, A:G.83 K.9: 5 residues within 4Å: Chain A: N.231, G.234, N.236, D.258, Q.261 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.231, A:G.234, A:Q.261, H2O.3 K.10: 5 residues within 4Å: Chain A: N.336, S.343, N.345, E.370, G.373 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.336, A:S.343, A:E.370, H2O.5

1 x NA: SODIUM ION(Non-functional Binders)

NA.11: 4 residues within 4Å: Chain A: L.104, N.105, D.118, F.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.105, A:D.118, A:F.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beugelink, J.W. et al., CRTAC1 has a Compact beta-propeller-TTR Core Stabilized by Potassium Ions. J.Mol.Biol. (2024)

Release Date

2024-07-31

Peptides

Cartilage acidic protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cartilage acidic protein 1