- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 1 x DT- DT- DT- DT- DT- DT- DT: DNA(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 20 residues within 4Å:- Chain A: W.393, L.397, P.427, I.428, D.429, S.430, G.431, K.432, T.433, T.434, K.550, L.553, K.554, L.557, L.564, I.569, Q.570
- Chain B: K.418, S.504, R.540
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:P.427, A:D.429, A:D.429, A:S.430, A:G.431, A:K.432, A:T.433, A:T.433, A:T.434, A:K.554, A:Q.570
- Salt bridges: A:K.432, A:K.432, B:R.540
- pi-Cation interactions: A:K.554
ADP.3: 20 residues within 4Å:- Chain B: W.393, L.397, P.427, I.428, D.429, S.430, G.431, K.432, T.433, T.434, P.549, K.550, L.553, K.554, L.557, L.564, I.569
- Chain C: K.418, S.504, R.540
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:P.427, B:D.429, B:D.429, B:S.430, B:G.431, B:G.431, B:K.432, B:T.433, B:T.433, B:T.434, B:T.434, B:K.550, B:K.550
- Salt bridges: B:K.432, C:K.418, C:K.418
ADP.4: 19 residues within 4Å:- Chain C: W.393, L.397, I.428, D.429, S.430, G.431, K.432, T.433, T.434, R.548, P.549, K.550, L.553, K.554, L.557, L.564, I.569
- Chain D: K.418, R.498
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:D.429, C:D.429, C:S.430, C:G.431, C:T.433, C:T.433, C:T.434, C:T.434, C:R.548, C:K.550, D:K.418
- Salt bridges: C:K.432, D:R.498
ADP.5: 21 residues within 4Å:- Chain D: W.393, L.397, I.428, D.429, S.430, G.431, K.432, T.433, T.434, R.548, P.549, K.550, L.553, K.554, L.557, L.564, I.569, Q.570
- Chain E: K.418, R.498, S.504
13 PLIP interactions:12 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:D.429, D:D.429, D:S.430, D:S.430, D:G.431, D:K.432, D:T.433, D:T.433, D:T.434, D:T.434, D:K.550
- Salt bridges: D:K.432, E:R.498
ADP.6: 18 residues within 4Å:- Chain E: W.393, L.397, I.428, D.429, S.430, G.431, K.432, T.433, T.434, R.548, P.549, K.550, L.553, K.554, L.557, L.564
- Chain F: K.418, R.498
13 PLIP interactions:12 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:D.429, E:S.430, E:G.431, E:K.432, E:T.433, E:T.433, E:T.433, E:T.434, E:T.434, E:R.548, E:K.550
- Salt bridges: E:K.432, F:R.498
ADP.7: 17 residues within 4Å:- Chain F: W.393, L.397, I.428, D.429, S.430, G.431, K.432, T.433, T.434, R.548, P.549, K.550, D.551, L.553, K.554, L.557, L.564
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:P.427, F:D.429, F:S.430, F:G.431, F:K.432, F:T.433, F:T.433, F:T.434, F:R.548, F:K.550
- Salt bridges: F:K.432
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shahid, T. et al., Structural dynamics of DNA unwinding by a replicative helicase. Nature (2025)
- Release Date
- 2025-02-05
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 1 x DT- DT- DT- DT- DT- DT- DT: DNA(Non-covalent)
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shahid, T. et al., Structural dynamics of DNA unwinding by a replicative helicase. Nature (2025)
- Release Date
- 2025-02-05
- Peptides
- Large T antigen: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F