SMTL ID : 9ewc.1 (1 other biounit)

DNA Polymerase Lambda I493R 528-530 NEY, TTP:At Ca2+ Ground State Ternary Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.67 Å

Oligo State

monomer

Ligands

1 x DC- DA- DG- DT- DA- DC: DNA primer strand upstream(Non-covalent)

DC-DA-DG-DT-DA-DC.1: 19 residues within 4Å: Chain A: W.102, G.103, A.104, G.105, T.106, K.107, T.108, D.189, R.243, D.245, Y.260, F.261 Chain B: G.6, T.7, A.8, C.9, T.10, G.11 Ligands: NA.3 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG: DNA primer strand downstream (5'P)(Non-covalent)

DG-DC-DC-DG.2: 15 residues within 4Å: Chain A: Y.27, W.34, R.35, G.38, Y.39, P.63, I.65, G.66, K.67, R.68, M.69 Chain B: C.1, G.2, G.3, C.4 Protein-ligand interaction information (PLIP) not available

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: S.99 Ligands: DC-DA-DG-DT-DA-DC.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.101 NA.4: 2 residues within 4Å: Chain A: L.234, R.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.234

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 2 residues within 4Å: Chain A: S.177, D.187 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.187, A:D.187, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nourisson, A. et al., DNA Polymerase Lambda I493R 528-530 NEY, TTP:At Ca2+ Ground State Ternary Complex. To Be Published

Release Date

2025-07-23

Peptides

DNA polymerase lambda: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase lambda

Related Entries With Identical Sequence