SMTL ID : 9ews.1

Optimisation of Potent, Efficacious, Selective and Blood-Brain Barrier Penetrating Inhibitors Targeting EGFR Exon20 Insertion Mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

1 x 01: 1-[3-pyridin-4-yl-2-[3-(2-pyrimidin-2-ylethynyl)phenyl]-4,6-dihydropyrrolo[3,4-d]imidazol-5-yl]propan-1-one

01.1: 21 residues within 4Å: Chain A: L.25, V.33, A.50, I.51, K.52, C.85, L.87, L.98, T.100, Q.101, L.102, M.103, C.107, D.110, R.151, L.154, T.164, D.165, F.166 Ligands: IOD.2, IOD.13 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.25, A:V.33, A:K.52, A:K.52, A:T.100, A:L.154, A:F.166 Hydrogen bonds: A:M.103 pi-Cation interactions: A:K.52

15 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: G.106 Ligands: 01.1 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: P.82, H.83, K.133 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: Y.225, D.226, P.244 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: T.202, H.203, Q.204 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: P.82 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: I.188, K.189 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: K.21, I.22, V.24, Y.34 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: W.190, K.223 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: V.144, R.146 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain A: E.277 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: V.33 Ligands: 01.1 Ligand excluded by PLIP IOD.14: 5 residues within 4Å: Chain A: G.28, A.29, F.30, G.31, K.52 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: L.102, P.104 Ligand excluded by PLIP IOD.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomson, C. et al., Optimization of Potent, Efficacious, Selective and Blood-Brain Barrier Penetrating Inhibitors Targeting EGFR Exon20 Insertion Mutations. J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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