SMTL ID : 9exa.1

SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.20 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x 01: 6-[[1-[4,6-dimethyl-5-(2-methylpropyl)pyrimidin-2-yl]piperidin-4-yl]-methyl-amino]-N-(2-pyrrolidin-1-ylethyl)pyridazine-4-carboxamide

01.1: 15 residues within 4Å: Chain A: W.39, W.76, Y.79, F.80, S.83, F.96, N.97, P.98, E.99, T.100, N.101, L.118 Chain B: Q.20, Y.23, A.24 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.79, A:Y.79, A:F.80, A:F.80, A:F.96, A:P.98, A:L.118, B:Y.23, B:A.24 Hydrogen bonds: A:T.100, A:N.101, B:Q.20 01.2: 15 residues within 4Å: Chain A: Q.20, Y.23, A.24 Chain B: W.39, W.76, Y.79, F.80, S.83, F.96, N.97, P.98, E.99, T.100, N.101, L.118 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.79, B:Y.79, B:F.80, B:F.80, B:F.96, B:P.98, B:L.118, A:Y.23, A:A.24 Hydrogen bonds: B:T.100, B:N.101, A:Q.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laporte, M. et al., An orally efficacious coronavirus assembly inhibitor that targets the viral M protein. To Be Published

Release Date

2025-01-22

Peptides

Membrane protein: AB
Fab-B light chain: CE
Fab-B heavy chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

D
D

F
F

Membrane

We predict this structure to be a membrane protein.
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Membrane protein

Fab-B light chain

Fab-B heavy chain

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