SMTL ID : 9ext.1 (1 other biounit)

Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to APL2/AP-1 Beta peptide (LLDL)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

3 x GLN- ASP- LEU- LEU- ASP- LEU: AP-1 complex subunit beta-1(Non-covalent)

GLN-ASP-LEU-LEU-ASP-LEU.1: 13 residues within 4Å: Chain A: W.171, L.190, S.192, R.195, I.197, Q.199, I.201, F.224, R.239, I.241, E.242, I.243, K.255 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.171, A:L.190, A:I.197, A:I.201, A:I.201, A:F.224, A:I.241, A:I.243 Hydrogen bonds: A:Q.199, A:Q.199, A:Q.199 Salt bridges: A:K.255 GLN-ASP-LEU-LEU-ASP-LEU.2: 12 residues within 4Å: Chain A: D.29, F.30, R.31, Q.159, I.177, L.178, Q.179, I.184, F.270, K.288, F.314, K.330 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.30, A:I.184, A:F.270 Hydrogen bonds: A:F.30, A:R.31, A:Q.159, A:Q.159, A:Q.159, A:K.288, A:K.330 Salt bridges: A:R.31, A:K.330 GLN-ASP-LEU-LEU-ASP-LEU.3: 7 residues within 4Å: Chain A: N.68, M.69, G.70, V.85, A.87, I.91, Q.93 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:M.69 Hydrogen bonds: A:G.70, A:Q.93 Salt bridges: A:K.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Defelipe, L.A. et al., Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast. Nat Commun (2024)

Release Date

2024-11-13

Peptides

Clathrin heavy chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Clathrin heavy chain

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