SMTL ID : 9exx.1 (1 other biounit)

Crystal structure of the PWWP1 domain of NSD2 bound by compound 18.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.67, E.69, Q.118 Ligands: 01.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.67, A:Q.118

1 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 2 residues within 4Å: Chain A: R.70, D.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.70

1 x 01: 4-methyl-3-[1-methyl-5-(3-oxidanylidene-4~{H}-1,4-benzoxazin-7-yl)imidazol-4-yl]-~{N}-phenyl-benzamide

01.3: 14 residues within 4Å: Chain A: V.27, Y.30, W.33, F.63, F.64, G.65, D.66, A.67, E.69, R.70, A.71, L.115, Q.118 Ligands: EDO.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.30, A:W.33, A:F.63, A:F.63, A:E.69, A:E.69, A:A.71, A:L.115 Hydrogen bonds: A:Y.30, A:Y.30, A:A.67, A:E.69, A:Q.118 pi-Stacking: A:Y.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carlino, L. et al., Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches. J.Med.Chem. (2024)

Release Date

2024-05-29

Peptides

Histone-lysine N-methyltransferase NSD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD2

Related Entries With Identical Sequence