SMTL ID : 9f19.1

Human USP30 chimera in complex with NK036 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x 01: 4-fluoranyl-~{N}-[(2~{S})-1-[[4-[(2-methyl-1-oxidanyl-propan-2-yl)sulfamoyl]phenyl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]benzamide

01.1: 21 residues within 4Å: Chain A: N.14, T.15, C.16, F.17, M.18, I.93, F.96, E.97, E.98, Q.99, D.100, A.101, L.104, R.217, L.218, K.228, H.259, M.263, H.264, F.268, Y.310 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.14, A:F.96, A:E.97, A:L.218, A:L.218, A:K.228, A:F.268, A:Y.310 Hydrogen bonds: A:F.17, A:M.18, A:Q.99, A:A.101, A:M.263 Water bridges: A:N.14 pi-Stacking: A:H.259 01.2: 22 residues within 4Å: Chain B: N.14, T.15, C.16, F.17, M.18, I.93, F.96, E.97, E.98, Q.99, D.100, A.101, L.104, R.217, L.218, W.220, K.228, H.259, M.263, H.264, F.268, Y.310 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.15, B:F.17, B:F.96, B:A.101, B:R.217, B:L.218, B:L.218, B:W.220, B:K.228, B:H.259, B:F.268 Hydrogen bonds: B:M.18, B:Q.99, B:A.101, B:M.263 pi-Stacking: B:F.17, B:H.259, B:Y.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kazi, N.H. et al., Chimeric deubiquitinase engineering reveals structural basis for specific inhibition of the mitophagy regulator USP30. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-03-19

Peptides

Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 14,Ubiquitin carboxyl-terminal hydrolase 35: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 30,Ubiquitin carboxyl-terminal hydrolase 14,Ubiquitin carboxyl-terminal hydrolase 35

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