SMTL ID : 9f2a.1

Pyrococcus abyssi PolD in complex with Rpa2 winged-helix domain class 2 (composite map)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: D.403, H.405, D.447, H.605 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.403, A:H.405, A:D.447, A:H.605

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.706, C.709, C.718, C.721 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.706, B:C.709, B:C.718, B:C.721 ZN.3: 4 residues within 4Å: Chain B: C.731, C.734, C.750, C.753 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.731, B:C.734, B:C.750, B:C.753 ZN.4: 4 residues within 4Å: Chain B: C.1123, C.1126, C.1139, C.1142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1123, B:C.1126, B:C.1139, B:C.1142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Carranza, M. et al., Communication between DNA polymerases and Replication Protein A within the archaeal replisome. Nat Commun (2024)

Release Date

2024-12-04

Peptides

DNA polymerase II small subunit: A
DNA polymerase II large subunit: B
RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase II small subunit

DNA polymerase II large subunit

RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination

Related Entries With Identical Sequence