SMTL ID : 9f2g.3 (3 other biounits)

Crystal structure of SARS-CoV-2 N-protein C-terminal domain (apo form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.6, R.9, Q.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.6, A:R.9, A:R.9, A:Q.19

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: K.13, R.40, Q.41 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.41 Salt bridges: B:K.13, B:R.40 SO4.3: 3 residues within 4Å: Chain B: K.3, R.6, R.9 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.6 Salt bridges: B:K.3, B:R.6, B:R.9 SO4.4: 2 residues within 4Å: Chain B: R.23 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.23 SO4.5: 3 residues within 4Å: Chain B: G.22, R.23 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.23 Water bridges: B:G.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marquez-Monino, M.A. et al., The ALS drug riluzole binds to the C-terminal domain of SARS-CoV-2 nucleocapsid protein and has antiviral activity. Structure (2024)

Release Date

2024-11-13

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Nucleoprotein

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