- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.36 Å
- Oligo State
- monomer
- Ligands
- 1 x 01: (R)-2-(3-(((4-methoxyphenyl)sulfonamido)methyl)phenyl)-2-(9-oxo-9H-fluorene-4-carboxamido)acetate
01.1: 19 residues within 4Å:- Chain A: Y.14, S.43, G.44, N.62, R.95, G.142, R.163, S.188, G.189, Y.205, Q.210, S.235, A.236, Y.252, F.257, S.282, G.283
- Ligands: SO4.4, DMS.6
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:A.236, A:Y.252, A:Y.252, A:Y.252, A:F.257, A:F.257
- Hydrogen bonds: A:R.95, A:S.188, A:Q.210, A:S.235, A:S.282
- Water bridges: A:N.62, A:R.95, A:R.95
- Salt bridges: A:R.95, A:R.163
- pi-Stacking: A:Y.14, A:Y.205, A:Y.252
- pi-Cation interactions: A:R.95
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 15 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.6: 3 residues within 4Å:- Chain A: R.95
- Ligands: 01.1, SO4.4
No protein-ligand interaction detected (PLIP)DMS.7: 4 residues within 4Å:- Chain A: D.102, R.150
- Ligands: DMS.13, DMS.16
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.150
- Salt bridges: A:D.102
DMS.8: 6 residues within 4Å:- Chain A: T.68, D.69, S.70, S.71, A.72, P.92
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.71, A:S.71, A:A.72
DMS.9: 3 residues within 4Å:- Chain A: R.174, E.176, R.178
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.174, A:R.178
- Salt bridges: A:E.176
DMS.10: 2 residues within 4Å:- Chain A: N.212, H.233
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.212
DMS.11: 3 residues within 4Å:- Chain A: W.130, H.131, L.132
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.132
DMS.12: 5 residues within 4Å:- Chain A: A.134, R.174, N.175, E.176
- Ligands: DMS.18
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.175
DMS.13: 8 residues within 4Å:- Chain A: I.101, D.102, H.104, Y.106, R.122, P.172
- Ligands: DMS.7, DMS.16
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.104, A:Y.106, A:R.122
- Salt bridges: A:D.102
DMS.14: 2 residues within 4Å:- Chain A: A.87, S.88
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.88
DMS.15: 4 residues within 4Å:- Chain A: S.118, L.137, T.138, R.139
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.139
DMS.16: 5 residues within 4Å:- Chain A: H.104, R.122, E.124
- Ligands: DMS.7, DMS.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.122, A:R.122
DMS.17: 2 residues within 4Å:- Chain A: H.232, L.258
No protein-ligand interaction detected (PLIP)DMS.18: 5 residues within 4Å:- Chain A: L.132, V.133, A.134, N.175
- Ligands: DMS.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.175
DMS.19: 3 residues within 4Å:- Chain A: I.186, D.206, Q.208
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:D.206
DMS.20: 3 residues within 4Å:- Chain A: N.184, T.185, F.226
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qin, Y. et al., Structure-Guided Conformational Restriction Leading to High-Affinity, Selective, and Cell-Active Tetrahydroisoquinoline-Based Noncovalent Keap1-Nrf2 Inhibitors. J.Med.Chem. (2024)
- Release Date
- 2024-10-30
- Peptides
- Kelch-like ECH-associated protein 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.36 Å
- Oligo State
- monomer
- Ligands
- 1 x 01: (R)-2-(3-(((4-methoxyphenyl)sulfonamido)methyl)phenyl)-2-(9-oxo-9H-fluorene-4-carboxamido)acetate
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 15 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qin, Y. et al., Structure-Guided Conformational Restriction Leading to High-Affinity, Selective, and Cell-Active Tetrahydroisoquinoline-Based Noncovalent Keap1-Nrf2 Inhibitors. J.Med.Chem. (2024)
- Release Date
- 2024-10-30
- Peptides
- Kelch-like ECH-associated protein 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A