- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- monomer
- Ligands
- 1 x 01: (R)-2-(2-((4-methoxyphenyl)sulfonyl)-1,2,3,4-tetrahydroisoquinolin-7-yl)-2-(9-oxo-9H-fluorene-4-carboxamido)acetate
01.1: 19 residues within 4Å:- Chain A: Y.14, S.43, G.44, N.62, R.95, G.142, R.163, S.188, G.189, Y.205, Q.210, S.235, A.236, Y.252, F.257, S.282, G.283
- Ligands: SO4.4, DMS.7
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:Y.14, A:R.95, A:A.236, A:Y.252, A:Y.252, A:Y.252, A:F.257, A:F.257
- Hydrogen bonds: A:G.44, A:S.188, A:Q.210, A:S.235, A:S.282
- Water bridges: A:N.62, A:R.95, A:R.95, A:R.95, A:R.163, A:R.163, A:Y.252
- Salt bridges: A:R.95, A:R.163
- pi-Stacking: A:Y.14, A:Y.205, A:Y.252
- pi-Cation interactions: A:R.95
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 14 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.7: 3 residues within 4Å:- Chain A: R.95
- Ligands: 01.1, SO4.4
No protein-ligand interaction detected (PLIP)DMS.8: 5 residues within 4Å:- Chain A: H.232, T.256, L.258, R.276
- Ligands: SO4.5
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.253, A:R.276
DMS.9: 6 residues within 4Å:- Chain A: T.68, D.69, S.70, S.71, A.72, P.92
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.71, A:S.71, A:A.72
DMS.10: 2 residues within 4Å:- Chain A: N.212, H.233
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.212, A:H.233
DMS.11: 3 residues within 4Å:- Chain A: W.130, H.131, L.132
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.132
DMS.12: 4 residues within 4Å:- Chain A: A.134, R.174, N.175
- Ligands: DMS.16
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.175
DMS.13: 2 residues within 4Å:- Chain A: A.87, S.88
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.88
DMS.14: 5 residues within 4Å:- Chain A: S.118, M.136, L.137, T.138, R.139
No protein-ligand interaction detected (PLIP)DMS.15: 2 residues within 4Å:- Chain A: N.81, C.293
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.81
DMS.16: 5 residues within 4Å:- Chain A: L.132, V.133, A.134, N.175
- Ligands: DMS.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.175
DMS.17: 5 residues within 4Å:- Chain A: C.75, S.84, P.85, C.86, D.128
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.128
- Salt bridges: A:D.128
DMS.18: 4 residues within 4Å:- Chain A: I.186, D.206, G.207, Q.208
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:D.206
DMS.19: 6 residues within 4Å:- Chain A: N.162, R.163, L.164, N.165, S.166, I.186
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.165, A:S.166
DMS.20: 3 residues within 4Å:- Chain A: R.174, E.176, R.178
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.174, A:R.178
- Salt bridges: A:E.176
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qin, Y. et al., Structure-Guided Conformational Restriction Leading to High-Affinity, Selective, and Cell-Active Tetrahydroisoquinoline-Based Noncovalent Keap1-Nrf2 Inhibitors. J.Med.Chem. (2024)
- Release Date
- 2024-10-30
- Peptides
- Kelch-like ECH-associated protein 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- monomer
- Ligands
- 1 x 01: (R)-2-(2-((4-methoxyphenyl)sulfonyl)-1,2,3,4-tetrahydroisoquinolin-7-yl)-2-(9-oxo-9H-fluorene-4-carboxamido)acetate
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 14 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qin, Y. et al., Structure-Guided Conformational Restriction Leading to High-Affinity, Selective, and Cell-Active Tetrahydroisoquinoline-Based Noncovalent Keap1-Nrf2 Inhibitors. J.Med.Chem. (2024)
- Release Date
- 2024-10-30
- Peptides
- Kelch-like ECH-associated protein 1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A