SMTL ID : 9f3v.1

RIP2K kinase domain dimer with bound compound 37 (N399), a speific NOD1 pathway inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x 01: N-[2,4-bis(chloranyl)-5-methoxy-phenyl]-7-[2-(diethylamino)ethoxy]-6-methoxy-quinazolin-4-amine

01.1: 18 residues within 4Å: Chain A: L.28, V.36, A.49, V.50, K.51, I.97, T.99, E.100, Y.101, M.102, P.103, G.105, E.109, R.113, Q.154, N.155, L.157, A.167 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.28, A:L.28, A:V.36, A:Y.101, A:A.167 Hydrogen bonds: A:K.51, A:M.102 Salt bridges: A:E.109 Halogen bonds: A:Q.154 01.2: 18 residues within 4Å: Chain B: L.28, V.36, A.49, V.50, K.51, I.97, T.99, E.100, Y.101, M.102, P.103, G.105, E.109, R.113, L.157, A.167, F.169, L.171 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.28, B:L.28, B:V.36, B:Y.101, B:L.157, B:A.167 Hydrogen bonds: B:T.99, B:M.102 Salt bridges: B:E.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barczyk, A. et al., 4-Anilinoquinazoline Derivatives as the First Potent NOD1-RIPK2 Signaling Pathway Inhibitors at the Nanomolar Range. J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Receptor-interacting serine/threonine-protein kinase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 2