SMTL ID : 9f5h.1 (1 other biounit)

Crystal structure of MGAT5 bump-and-hole mutant in complex with UDP and M592

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE

UDP.1: 15 residues within 4Å: Chain A: G.80, P.81, L.82, G.83, Y.226, K.228, T.252, I.270, L.271, L.276, P.292, G.295, P.296, A.297, E.300 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.228 Hydrogen bonds: A:L.82, A:G.83, A:Y.226, A:K.228, A:L.271, A:L.271, A:A.297, A:E.300 Water bridges: A:A.84 Salt bridges: A:K.228, A:K.228

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.2: 8 residues within 4Å: Chain A: A.84, I.127, L.151, D.152, S.153, W.175, K.328 Ligands: MAN.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.84 Hydrogen bonds: A:S.153, A:S.153, A:S.153 Water bridges: A:L.151, A:F.154

2 x MAN: alpha-D-mannopyranose

MAN.3: 5 residues within 4Å: Chain A: P.81, F.324, K.328 Ligands: NAG.2, MAN.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.328, A:K.328 MAN.4: 3 residues within 4Å: Chain A: G.69, F.70 Ligands: MAN.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., A Bioorthogonal Precision Tool for Human N -Acetylglucosaminyltransferase V. J.Am.Chem.Soc. (2024)

Release Date

2024-10-02

Peptides

Secreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Secreted alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

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