SMTL ID : 9f6i.1

Human DNA Polymerase epsilon bound to T-C mismatched DNA (Post-Insertion state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 6 residues within 4Å: Chain A: C.651, C.654, N.657, C.663, Q.664, C.747 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.651, A:C.654, A:C.663, A:C.747

1 x DDS: 2',3'-dideoxyadenosine triphosphate(Non-covalent)

DDS.2: 12 residues within 4Å: Chain A: D.626, V.627, G.628, A.629, M.630, Y.631, Y.816, D.862 Chain B: C.31 Chain C: T.7, T.8 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.631 Hydrogen bonds: A:A.629, A:M.630, A:Y.631

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.626, V.627, D.862 Ligands: DDS.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.626, A:V.627, A:D.862

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roske, J.J. et al., Structural basis for processive daughter-strand synthesis and proofreading by the human leading-strand DNA polymerase Pol epsilon. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-08-07

Peptides

DNA polymerase epsilon catalytic subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase epsilon catalytic subunit A

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