SMTL ID : 9f6l.1

Human DNA Polymerase epsilon bound to T-C mismatched DNA (Mismatch Excision state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 6 residues within 4Å: Chain A: L.145, C.651, C.654, N.657, C.663, C.747 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.651, A:C.654, A:C.663, A:C.747

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.275, D.368 Chain B: T.30, C.31 Ligands: CA.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.275, A:D.368 CA.3: 6 residues within 4Å: Chain A: D.275, E.277, D.462 Chain B: T.30, C.31 Ligands: CA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.275, A:E.277, A:D.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roske, J.J. et al., Structural basis for processive daughter-strand synthesis and proofreading by the human leading-strand DNA polymerase Pol epsilon. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-08-07

Peptides

DNA polymerase epsilon catalytic subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase epsilon catalytic subunit A

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